SMTL ID : 5bq6.1 (1 other biounit)

Structure of the yeast F1FO ATPase C10 ring with oligomycin B

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-10-mer

Ligands

8 x EFB: oligomycin B(Non-covalent)

EFB.1: 10 residues within 4Å: Chain A: F.55, A.56, E.59, L.63 Chain J: L.53, A.56, L.57, A.60, F.64 Ligands: EFB.8 2 PLIP interactions: 2 interactions with chain J Hydrophobic interactions: J:L.53, J:A.56 EFB.2: 12 residues within 4Å: Chain A: L.53, A.56, L.57, A.60, F.64 Chain B: I.52, F.55, A.56, E.59, L.63, L.66 Ligands: EFB.3 10 PLIP interactions: 6 interactions with chain B, 4 interactions with chain A Hydrophobic interactions: B:I.52, B:F.55, B:A.56, B:E.59, B:L.66, A:L.53, A:A.56, A:L.57, A:A.60 Hydrogen bonds: B:E.59 EFB.3: 12 residues within 4Å: Chain B: L.53, A.56, L.57, A.60, F.64 Chain C: I.52, A.56, E.59, A.60, L.63, L.66 Ligands: EFB.2 11 PLIP interactions: 5 interactions with chain C, 6 interactions with chain B Hydrophobic interactions: C:I.52, C:A.56, C:A.60, C:L.63, C:L.66, B:L.53, B:A.56, B:L.57, B:A.60, B:F.64, B:F.64 EFB.4: 12 residues within 4Å: Chain D: A.56, L.57, A.60, F.64 Chain E: I.52, F.55, A.56, E.59, A.60, L.63, L.66 Ligands: EFB.5 10 PLIP interactions: 6 interactions with chain E, 4 interactions with chain D Hydrophobic interactions: E:I.52, E:A.56, E:E.59, E:A.60, E:L.63, E:L.66, D:A.56, D:L.57, D:A.60, D:F.64 EFB.5: 10 residues within 4Å: Chain E: L.53, A.56, L.57, A.60, F.64 Chain F: F.55, A.56, E.59, L.63 Ligands: EFB.4 2 PLIP interactions: 2 interactions with chain E Hydrophobic interactions: E:L.53, E:A.56 EFB.6: 12 residues within 4Å: Chain F: L.53, A.56, L.57, A.60, F.64 Chain G: I.52, F.55, A.56, E.59, L.63, L.66 Ligands: EFB.7 10 PLIP interactions: 4 interactions with chain F, 6 interactions with chain G Hydrophobic interactions: F:L.53, F:A.56, F:L.57, F:A.60, G:I.52, G:F.55, G:A.56, G:E.59, G:L.66 Hydrogen bonds: G:E.59 EFB.7: 12 residues within 4Å: Chain G: L.53, A.56, L.57, A.60, F.64 Chain H: I.52, A.56, E.59, A.60, L.63, L.66 Ligands: EFB.6 11 PLIP interactions: 6 interactions with chain G, 5 interactions with chain H Hydrophobic interactions: G:L.53, G:A.56, G:L.57, G:A.60, G:F.64, G:F.64, H:I.52, H:A.56, H:A.60, H:L.63, H:L.66 EFB.8: 12 residues within 4Å: Chain I: A.56, L.57, A.60, F.64 Chain J: I.52, F.55, A.56, E.59, A.60, L.63, L.66 Ligands: EFB.1 10 PLIP interactions: 6 interactions with chain J, 4 interactions with chain I Hydrophobic interactions: J:I.52, J:A.56, J:E.59, J:A.60, J:L.63, J:L.66, I:A.56, I:L.57, I:A.60, I:F.64

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mueller, D.M., Structure of the yeast F1FO ATPase C10 ring with oligomycin B. To be Published

Release Date

2015-08-26

Peptides

ATP synthase subunit 9, mitochondrial: ABCDEFGHIJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
A

G
B

H
C

I
D

J
E

Membrane

We predict this structure to be a membrane protein.
Show / Hide

ATP synthase subunit 9, mitochondrial

Related Entries With Identical Sequence