SMTL ID : 5bq6.2 (1 other biounit)

Structure of the yeast F1FO ATPase C10 ring with oligomycin B

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-10-mer

Ligands

6 x EFB: oligomycin B(Non-covalent)

EFB.1: 13 residues within 4Å: Chain A: L.53, A.56, L.57, A.60, F.64 Chain B: I.52, F.55, A.56, E.59, A.60, G.62, L.63 Ligands: EFB.2 10 PLIP interactions: 3 interactions with chain A, 7 interactions with chain B Hydrophobic interactions: A:L.53, A:A.56, A:A.60, B:I.52, B:F.55, B:A.56, B:E.59, B:A.60, B:L.63, B:L.63 EFB.2: 12 residues within 4Å: Chain B: L.53, A.56, L.57, A.60, F.64 Chain C: I.52, F.55, A.56, E.59, L.63, L.66 Ligands: EFB.1 10 PLIP interactions: 5 interactions with chain C, 5 interactions with chain B Hydrophobic interactions: C:I.52, C:E.59, C:L.63, C:L.66, B:L.53, B:A.56, B:L.57, B:F.64, B:F.64 Hydrogen bonds: C:E.59 EFB.3: 11 residues within 4Å: Chain D: L.53, A.56, L.57, A.60, F.64 Chain E: I.52, F.55, A.56, E.59, A.60, L.63 12 PLIP interactions: 8 interactions with chain E, 4 interactions with chain D Hydrophobic interactions: E:I.52, E:F.55, E:F.55, E:A.56, E:E.59, E:A.60, D:A.56, D:L.57, D:A.60, D:F.64 Hydrogen bonds: E:E.59, E:L.63 EFB.4: 13 residues within 4Å: Chain F: L.53, A.56, L.57, A.60, F.64 Chain G: I.52, F.55, A.56, E.59, A.60, G.62, L.63 Ligands: EFB.5 10 PLIP interactions: 3 interactions with chain F, 7 interactions with chain G Hydrophobic interactions: F:L.53, F:A.56, F:A.60, G:I.52, G:F.55, G:A.56, G:E.59, G:A.60, G:L.63, G:L.63 EFB.5: 12 residues within 4Å: Chain G: L.53, A.56, L.57, A.60, F.64 Chain H: I.52, F.55, A.56, E.59, L.63, L.66 Ligands: EFB.4 10 PLIP interactions: 5 interactions with chain G, 5 interactions with chain H Hydrophobic interactions: G:L.53, G:A.56, G:L.57, G:F.64, G:F.64, H:I.52, H:E.59, H:L.63, H:L.66 Hydrogen bonds: H:E.59 EFB.6: 11 residues within 4Å: Chain I: L.53, A.56, L.57, A.60, F.64 Chain J: I.52, F.55, A.56, E.59, A.60, L.63 12 PLIP interactions: 8 interactions with chain J, 4 interactions with chain I Hydrophobic interactions: J:I.52, J:F.55, J:F.55, J:A.56, J:E.59, J:A.60, I:A.56, I:L.57, I:A.60, I:F.64 Hydrogen bonds: J:E.59, J:L.63

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mueller, D.M., Structure of the yeast F1FO ATPase C10 ring with oligomycin B. To be Published

Release Date

2015-08-26

Peptides

ATP synthase subunit 9, mitochondrial: ABCDEFGHIJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
K

B
L

C
M

D
N

E
O

F
K

G
L

H
M

I
N

J
O

Membrane

We predict this structure to be a membrane protein.
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ATP synthase subunit 9, mitochondrial

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