SMTL ID : 4gfd.1

Thymidylate kinase (TMK) from S. Aureus in complex with TK-666

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x 0YB: 2-(3-bromophenoxy)-4-{(1R)-3,3-dimethyl-1-[(3S)-3-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)piperidin-1-yl]butyl}benzoic acid(Non-covalent)

0YB.1: 12 residues within 4Å: Chain A: E.37, I.47, R.48, L.52, F.66, S.69, R.70, R.92, S.96, S.97, Y.100, Q.101 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:R.48, A:L.52, A:F.66, A:F.66, A:R.92, A:Y.100 Hydrogen bonds: A:R.70, A:R.70, A:Q.101, A:Q.101 Salt bridges: A:R.48 pi-Stacking: A:F.66 0YB.2: 12 residues within 4Å: Chain B: E.37, I.47, R.48, L.52, F.66, S.69, R.70, R.92, S.96, S.97, Y.100, Q.101 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:R.48, B:L.52, B:F.66, B:Y.100 Hydrogen bonds: B:R.70, B:R.70, B:Q.101, B:Q.101 Salt bridges: B:R.48 pi-Stacking: B:F.66

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Keating, T.A. et al., In Vivo Validation of Thymidylate Kinase (TMK) with a Rationally Designed, Selective Antibacterial Compound. Acs Chem.Biol. (2012)

Release Date

2012-10-24

Peptides

Thymidylate kinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Thymidylate kinase

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