SMTL ID : 4hdc.1

Discovery of Selective and Potent Inhibitors of Gram-positive Bacterial Thymidylate Kinase (TMK: Compound 41)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

homo-dimer

Ligands

2 x 13Y: 2-(3-chlorophenoxy)-4-{(1R)-3-methyl-1-[(3S)-3-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)piperidin-1-yl]butyl}benzoic acid(Non-covalent)

13Y.1: 14 residues within 4Å: Chain A: E.11, E.37, I.47, R.48, V.51, L.52, F.66, S.69, R.70, R.92, S.96, S.97, Y.100, Q.101 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:R.48, A:F.66, A:F.66, A:R.92, A:Y.100 Hydrogen bonds: A:R.70, A:R.70, A:Q.101, A:Q.101 Salt bridges: A:R.48 pi-Stacking: A:F.66 13Y.2: 14 residues within 4Å: Chain B: E.11, E.37, I.47, R.48, V.51, L.52, F.66, S.69, R.70, R.92, S.96, S.97, Y.100, Q.101 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:R.48, B:V.51, B:L.52, B:F.66, B:R.92, B:Y.100 Hydrogen bonds: B:R.70, B:R.70, B:Q.101, B:Q.101 Salt bridges: B:E.11, B:R.48 pi-Stacking: B:F.66

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Martinez-Botella, G. et al., Discovery of Selective and Potent Inhibitors of Gram-Positive Bacterial Thymidylate Kinase (TMK). J.Med.Chem. (2012)

Release Date

2012-10-24

Peptides

Thymidylate kinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Thymidylate kinase

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