SMTL ID : 4mcy.1

Immune Receptor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-1-1-1-mer

Ligands

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 1 residues within 4Å: Chain A: N.78 No protein-ligand interaction detected (PLIP) NAG.2: 5 residues within 4Å: Chain A: V.116, N.118, E.166, H.167, W.168 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:V.116 Hydrogen bonds: A:N.118, A:W.168 Water bridges: A:N.118 NAG.4: 2 residues within 4Å: Chain B: N.21, E.24 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.21

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 5 residues within 4Å: Chain A: T.80, P.81, I.82, T.83 Chain B: H.35 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:T.83 Water bridges: A:T.83, B:E.37, B:E.37 EDO.5: 4 residues within 4Å: Chain B: T.79, Y.80 Chain C: L.5, R.6 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:T.79

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Scally, S.W. et al., A molecular basis for the association of the HLA-DRB1 locus, citrullination, and rheumatoid arthritis. J.Exp.Med. (2013)

Release Date

2013-11-27

Peptides

HLA class II histocompatibility antigen, DR alpha chain: A
HLA class II histocompatibility antigen, DRB1-4 beta chain: B
Citrullinated Vimentin: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

HLA class II histocompatibility antigen, DR alpha chain

HLA class II histocompatibility antigen, DRB1-4 beta chain

Citrullinated Vimentin

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