- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.29 Å
- Oligo State
- hetero-1-1-1-1-1-mer
- Ligands
- 3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 20 x GOL: GLYCEROL(Non-functional Binders)
GOL.4: 4 residues within 4Å:- Chain B: Q.64, K.65, D.66, E.69
Ligand excluded by PLIPGOL.5: 4 residues within 4Å:- Chain A: R.44, V.104, Y.150
- Chain B: D.152
Ligand excluded by PLIPGOL.6: 3 residues within 4Å:- Chain B: Q.92, R.93, R.94
Ligand excluded by PLIPGOL.7: 5 residues within 4Å:- Chain A: F.108, F.148
- Chain B: L.147, I.148, Q.149
Ligand excluded by PLIPGOL.8: 3 residues within 4Å:- Chain B: Y.60
- Chain C: A.12, T.13
Ligand excluded by PLIPGOL.10: 3 residues within 4Å:- Chain D: A.189, N.193, F.203
Ligand excluded by PLIPGOL.11: 5 residues within 4Å:- Chain D: E.65, A.66, T.67, H.76, Q.78
Ligand excluded by PLIPGOL.12: 7 residues within 4Å:- Chain B: E.69, Q.70, A.73
- Chain D: K.51, I.53
- Chain E: Q.98, N.99
Ligand excluded by PLIPGOL.13: 4 residues within 4Å:- Chain D: L.50, K.51, G.59, S.60
Ligand excluded by PLIPGOL.14: 2 residues within 4Å:- Chain D: Y.41, E.44
Ligand excluded by PLIPGOL.15: 3 residues within 4Å:- Chain D: E.44, G.45
- Ligands: GOL.23
Ligand excluded by PLIPGOL.16: 6 residues within 4Å:- Chain D: V.114, S.145, Q.146, T.147, N.148, K.162
Ligand excluded by PLIPGOL.17: 7 residues within 4Å:- Chain D: S.152, K.153, D.154, V.157, N.190, A.191, N.194
Ligand excluded by PLIPGOL.18: 2 residues within 4Å:- Chain D: G.9, Q.10
Ligand excluded by PLIPGOL.19: 6 residues within 4Å:- Chain E: E.122, T.146, G.147, E.177, R.185
- Ligands: GOL.20
Ligand excluded by PLIPGOL.20: 7 residues within 4Å:- Chain D: Y.158, W.180, N.182
- Chain E: T.146, E.177, A.187
- Ligands: GOL.19
Ligand excluded by PLIPGOL.21: 5 residues within 4Å:- Chain E: P.128, E.130, I.133, W.199, R.240
Ligand excluded by PLIPGOL.22: 5 residues within 4Å:- Chain A: Q.57
- Chain E: I.53, V.54, N.55, E.56
Ligand excluded by PLIPGOL.23: 5 residues within 4Å:- Chain E: A.1, V.2, F.103, A.105
- Ligands: GOL.15
Ligand excluded by PLIPGOL.24: 8 residues within 4Å:- Chain C: R.4, A.5
- Chain D: S.97, S.99
- Chain E: W.95, A.96, S.97, Q.98
Ligand excluded by PLIP- 1 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lim, J.J. et al., The shared susceptibility epitope of HLA-DR4 binds citrullinated self-antigens and the TCR. Sci Immunol (2021)
- Release Date
- 2020-11-25
- Peptides
- HLA class II histocompatibility antigen, DR alpha chain: A
HLA class II histocompatibility antigen, DRB1-4 beta chain: B
Fibrinogen beta 74cit69-81: C
M134 TCR alpha chain: D
M134 TCR beta chain: E - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
E
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.29 Å
- Oligo State
- hetero-1-1-1-1-1-mer
- Ligands
- 3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 20 x GOL: GLYCEROL(Non-functional Binders)
- 1 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lim, J.J. et al., The shared susceptibility epitope of HLA-DR4 binds citrullinated self-antigens and the TCR. Sci Immunol (2021)
- Release Date
- 2020-11-25
- Peptides
- HLA class II histocompatibility antigen, DR alpha chain: A
HLA class II histocompatibility antigen, DRB1-4 beta chain: B
Fibrinogen beta 74cit69-81: C
M134 TCR alpha chain: D
M134 TCR beta chain: E - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
E