SMTL ID : 6bir.1

HLA-DRB1 in complex with citrullinated Vimentin peptide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-1-1-1-mer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 1 residues within 4Å: Chain A: N.78 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.78 NAG.2: 5 residues within 4Å: Chain A: V.116, N.118, E.166, W.168 Chain B: D.4 4 PLIP interactions: 1 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:D.4, A:N.118, A:W.168 Hydrophobic interactions: A:V.116

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ting, Y.T. et al., The interplay between citrullination and HLA-DRB1 polymorphism in shaping peptide binding hierarchies in rheumatoid arthritis. J. Biol. Chem. (2018)

Release Date

2018-01-17

Peptides

HLA class II histocompatibility antigen, DR alpha chain: A
MHC class II antigen: B
Vimentin 424Cit419-431: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

HLA class II histocompatibility antigen, DR alpha chain

MHC class II antigen

Vimentin 424Cit419-431

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