SMTL ID : 6ati.1 (1 other biounit)

HLA-DRB1*1402 in complex with Vimentin-64Cit59-71

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.98 Å

Oligo State

hetero-1-1-1-mer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: R.76, N.78 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.76 NAG.2: 5 residues within 4Å: Chain A: V.116, N.118, E.166, W.168 Chain B: D.4 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Water bridges: B:D.4 Hydrogen bonds: A:W.168

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Scally, S.W. et al., Molecular basis for increased susceptibility of Indigenous North Americans to seropositive rheumatoid arthritis. Ann. Rheum. Dis. (2017)

Release Date

2017-09-13

Peptides

HLA class II histocompatibility antigen, DR alpha chain: A
MHC class II antigen: B
Vimentin-64Cit59-71: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

HLA class II histocompatibility antigen, DR alpha chain

MHC class II antigen

Vimentin-64Cit59-71

Related Entries With Identical Sequence