SMTL ID : 6bin.1

HLA-DRB1 in complex with Type II collagen peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 5 residues within 4Å: Chain A: N.118, E.166, H.167, W.168 Chain C: D.4 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:D.4

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 3 residues within 4Å: Chain A: R.76, S.77, N.78 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.76, A:N.78 NAG.3: 2 residues within 4Å: Chain C: N.21, E.24 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ting, Y.T. et al., The interplay between citrullination and HLA-DRB1 polymorphism in shaping peptide binding hierarchies in rheumatoid arthritis. J. Biol. Chem. (2018)

Release Date

2018-01-17

Peptides

HLA class II histocompatibility antigen, DR alpha chain: A
Type II Collagen 1240Cit 1237-1249: B
HLA class II histocompatibility antigen, DRB1-4 beta chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
B

HLA class II histocompatibility antigen, DR alpha chain

Type II Collagen 1240Cit 1237-1249

HLA class II histocompatibility antigen, DRB1-4 beta chain

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