SMTL ID : 6ati.2 (1 other biounit)

HLA-DRB1*1402 in complex with Vimentin-64Cit59-71

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.98 Å

Oligo State

hetero-1-1-1-mer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: R.76, N.78 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.76 NAG.2: 5 residues within 4Å: Chain A: N.118, E.166, H.167, W.168 Chain B: D.4 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:E.166 Hydrogen bonds: A:W.168, A:W.168 Water bridges: A:N.118

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Scally, S.W. et al., Molecular basis for increased susceptibility of Indigenous North Americans to seropositive rheumatoid arthritis. Ann. Rheum. Dis. (2017)

Release Date

2017-09-13

Peptides

HLA class II histocompatibility antigen, DR alpha chain: A
MHC class II antigen: B
Vimentin-64Cit59-71: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
E

C
F

HLA class II histocompatibility antigen, DR alpha chain

MHC class II antigen

Vimentin-64Cit59-71

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