SMTL ID : 4nf6.1

Crystal structure of GluN1/GluN2A ligand-binding domain in complex with glycine and PPDA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GLY: GLYCINE(Non-covalent)

GLY.1: 10 residues within 4Å: Chain A: F.92, P.124, L.125, T.126, R.131, S.179, S.180, W.223, D.224, F.250 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:T.126, A:T.126, A:S.180, A:S.180, A:D.224 Water bridges: A:D.224 Salt bridges: A:R.131

1 x 2JL: (2S,3R)-1-(phenanthren-2-ylcarbonyl)piperazine-2,3-dicarboxylic acid(Non-covalent)

2JL.2: 14 residues within 4Å: Chain B: E.13, A.14, H.85, S.111, L.112, T.113, R.118, S.170, V.194, Y.211, D.212, V.215, K.219, Y.242 19 PLIP interactions: 19 interactions with chain B Hydrophobic interactions: B:E.13, B:V.194, B:V.194, B:Y.211, B:V.215, B:V.215 Hydrogen bonds: B:S.111, B:S.111, B:T.113, B:T.113, B:T.113, B:S.170 Water bridges: B:H.85, B:R.118, B:R.118, B:T.171, B:T.171 Salt bridges: B:H.85, B:R.118

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jespersen, A. et al., Structural Insights into Competitive Antagonism in NMDA Receptors. Neuron (2014)

Release Date

2014-03-12

Peptides

Glutamate receptor ionotropic, NMDA 1: A
Glutamate receptor ionotropic, NMDA 2A: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glutamate receptor ionotropic, NMDA 1

Glutamate receptor ionotropic, NMDA 2A

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