- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.45 Å
- Oligo State
- homo-15-mer
- Ligands
- 15 x U- U: RNA (5'-R(P*UP*U)-3')(Non-covalent)
- 3 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.16: 12 residues within 4Å:- Chain A: N.115, N.117
- Chain B: N.115, N.117
- Chain C: N.115, N.117
- Chain D: N.115, N.117
- Chain E: N.115, N.117
- Ligands: SO4.26, MG.28
11 PLIP interactions:2 interactions with chain D, 2 interactions with chain A, 2 interactions with chain B, 3 interactions with chain E, 2 interactions with chain C- Hydrogen bonds: D:N.115, D:N.117, A:N.115, A:N.117, B:N.115, B:N.117, E:N.115, E:N.115, E:N.117, C:N.115, C:N.117
PO4.37: 11 residues within 4Å:- Chain F: N.115, N.117
- Chain G: N.115, N.117
- Chain H: N.115, N.117
- Chain I: N.115, N.117
- Chain J: N.115, N.117
- Ligands: MG.32
10 PLIP interactions:2 interactions with chain G, 2 interactions with chain F, 2 interactions with chain J, 2 interactions with chain I, 2 interactions with chain H- Hydrogen bonds: G:N.115, G:N.117, F:N.115, F:N.117, J:N.115, J:N.117, I:N.115, I:N.117, H:N.115, H:N.117
PO4.52: 12 residues within 4Å:- Chain K: N.115, N.117
- Chain L: N.115, N.117
- Chain M: N.115, N.117
- Chain N: N.115, N.117
- Chain O: N.115, N.117
- Ligands: MG.45, SO4.49
13 PLIP interactions:3 interactions with chain N, 3 interactions with chain L, 3 interactions with chain O, 2 interactions with chain K, 2 interactions with chain M- Hydrogen bonds: N:N.115, N:N.115, N:N.117, L:N.115, L:N.115, L:N.117, O:N.115, O:N.115, O:N.117, K:N.115, K:N.117, M:N.115, M:N.117
- 18 x SO4: SULFATE ION(Non-functional Binders)
SO4.17: 2 residues within 4Å:- Chain A: F.93, R.95
Ligand excluded by PLIPSO4.19: 2 residues within 4Å:- Chain B: F.93, R.95
Ligand excluded by PLIPSO4.22: 2 residues within 4Å:- Chain C: F.93, R.95
Ligand excluded by PLIPSO4.24: 2 residues within 4Å:- Chain D: F.93, R.95
Ligand excluded by PLIPSO4.26: 7 residues within 4Å:- Chain A: N.117
- Chain B: N.117
- Chain C: N.117
- Chain D: N.117
- Chain E: I.116, N.117
- Ligands: PO4.16
Ligand excluded by PLIPSO4.27: 2 residues within 4Å:- Chain E: F.93, R.95
Ligand excluded by PLIPSO4.31: 2 residues within 4Å:- Chain F: F.93, R.95
Ligand excluded by PLIPSO4.34: 5 residues within 4Å:- Chain F: N.117
- Chain G: N.117
- Chain H: N.117
- Chain I: N.117
- Chain J: N.117
Ligand excluded by PLIPSO4.35: 2 residues within 4Å:- Chain G: F.93, R.95
Ligand excluded by PLIPSO4.38: 2 residues within 4Å:- Chain H: F.93, R.95
Ligand excluded by PLIPSO4.40: 2 residues within 4Å:- Chain I: F.93, R.95
Ligand excluded by PLIPSO4.42: 2 residues within 4Å:- Chain J: F.93, R.95
Ligand excluded by PLIPSO4.44: 2 residues within 4Å:- Chain K: F.93, R.95
Ligand excluded by PLIPSO4.47: 2 residues within 4Å:- Chain L: F.93, R.95
Ligand excluded by PLIPSO4.49: 8 residues within 4Å:- Chain K: I.116, N.117
- Chain L: N.117
- Chain M: N.117
- Chain N: N.117
- Chain O: I.116, N.117
- Ligands: PO4.52
Ligand excluded by PLIPSO4.50: 2 residues within 4Å:- Chain M: F.93, R.95
Ligand excluded by PLIPSO4.53: 2 residues within 4Å:- Chain N: F.93, R.95
Ligand excluded by PLIPSO4.55: 2 residues within 4Å:- Chain O: F.93, R.95
Ligand excluded by PLIP- 17 x NA: SODIUM ION(Non-functional Binders)
NA.18: 4 residues within 4Å:- Chain A: R.66, D.68
- Chain O: D.68
- Ligands: NA.56
Ligand excluded by PLIPNA.20: 1 residues within 4Å:- Chain B: D.68
Ligand excluded by PLIPNA.21: 2 residues within 4Å:- Chain B: R.66, D.68
Ligand excluded by PLIPNA.23: 2 residues within 4Å:- Chain C: R.66, D.68
Ligand excluded by PLIPNA.25: 2 residues within 4Å:- Chain D: R.66, D.68
Ligand excluded by PLIPNA.29: 6 residues within 4Å:- Chain E: R.66, D.68
- Chain F: D.68, S.69
- Ligands: NA.30, NA.33
Ligand excluded by PLIPNA.30: 3 residues within 4Å:- Chain E: D.68
- Chain F: D.68
- Ligands: NA.29
Ligand excluded by PLIPNA.33: 5 residues within 4Å:- Chain E: D.68, S.69
- Chain F: R.66, D.68
- Ligands: NA.29
Ligand excluded by PLIPNA.36: 2 residues within 4Å:- Chain G: R.66, D.68
Ligand excluded by PLIPNA.39: 2 residues within 4Å:- Chain H: R.66, D.68
Ligand excluded by PLIPNA.41: 2 residues within 4Å:- Chain I: R.66, D.68
Ligand excluded by PLIPNA.43: 5 residues within 4Å:- Chain J: R.66, D.68
- Chain K: D.68, S.69
- Ligands: NA.46
Ligand excluded by PLIPNA.46: 4 residues within 4Å:- Chain J: D.68
- Chain K: R.66, D.68
- Ligands: NA.43
Ligand excluded by PLIPNA.48: 2 residues within 4Å:- Chain L: R.66, D.68
Ligand excluded by PLIPNA.51: 2 residues within 4Å:- Chain M: R.66, D.68
Ligand excluded by PLIPNA.54: 2 residues within 4Å:- Chain N: R.66, D.68
Ligand excluded by PLIPNA.56: 5 residues within 4Å:- Chain A: D.68, S.69
- Chain O: R.66, D.68
- Ligands: NA.18
Ligand excluded by PLIP- 3 x MG: MAGNESIUM ION(Non-covalent)
MG.28: 4 residues within 4Å:- Chain A: N.115
- Chain D: N.115
- Chain E: N.115
- Ligands: PO4.16
No protein-ligand interaction detected (PLIP)MG.32: 2 residues within 4Å:- Chain F: N.115
- Ligands: PO4.37
No protein-ligand interaction detected (PLIP)MG.45: 2 residues within 4Å:- Chain L: N.115
- Ligands: PO4.52
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Larson, S.B. et al., Satellite tobacco mosaic virus refined to 1.4 angstrom resolution. Acta Crystallogr.,Sect.D (2014)
- Release Date
- 2014-09-10
- Peptides
- Coat protein: ABCDEFGHIJKLMNO
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
HI
IJ
JK
KL
LM
MN
NO
O
SMTL ID : 4oq9.2 (2 other biounits)
Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints
Coat protein
Toggle Identical (ABCDEFGHIJKLMNO)Related Entries With Identical Sequence
1a34.1 | 1a34.2 | 1a34.3 | 1a34.4 | 1a34.5 | 4nia.1 | 4oq8.1 | 4oq8.2 | 4oq8.3 | 4oq8.4 | 4oq8.5 | 4oq9.1 | 4oq9.3 | 5bkl.1 | 5bkn.1 | 5bkq.1 | 7m2t.1 | 7m2t.2 | 7m2t.3 | 7m2t.4 | 7m2t.5 | 7m2t.6 | 7m2t.7 | 7m2t.8 | 7m2t.9 | 7m2t.10 | 7m2t.11 | 7m2t.12 | 7m2t.13 | 7m2t.14 more...less...7m2t.15 | 7m2t.16 | 7m2t.17 | 7m2t.18 | 7m2t.19 | 7m2t.20 | 7m2t.21 | 7m2t.22 | 7m2t.23 | 7m2t.24 | 7m2t.25 | 7m2t.26 | 7m2t.27 | 7m2t.28 | 7m2t.29 | 7m2t.30 | 7m2v.1 | 7m3r.1 | 7m3t.1 | 7m50.1 | 7m54.1 | 7m57.1 | 7m57.2 | 7m57.3 | 7m57.4 | 7m57.5 | 7m57.6 | 7m57.7 | 7m57.8 | 7m57.9 | 7m57.10 | 7m57.11 | 7m57.12 | 7m57.13 | 7m57.14 | 7m57.15 | 7m57.16 | 7m57.17 | 7m57.18 | 7m57.19 | 7m57.20 | 7m57.21 | 7m57.22 | 7m57.23 | 7m57.24 | 7m57.25 | 7m57.26 | 7m57.27 | 7m57.28 | 7m57.29 | 7m57.30