SMTL ID : 4poe.1

Urate oxidase co-crystallized with uric acid and azide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.07 Å

Oligo State

homo-tetramer

Ligands

8 x AZI: AZIDE ION(Non-covalent)

AZI.1: 6 residues within 4Å: Chain A: F.160, Q.229, I.289 Chain B: I.55, A.57, T.58 9 PLIP interactions: 4 interactions with chain B, 5 interactions with chain A Hydrogen bonds: B:T.58, A:Q.229, A:Q.229 Water bridges: B:T.58, B:T.58, B:D.59, A:N.255, A:N.255, A:N.255 AZI.2: 5 residues within 4Å: Chain A: A.6, A.7, R.8 Chain B: K.290, C.291 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.8, A:R.8 Water bridges: A:A.7, A:E.40 AZI.4: 6 residues within 4Å: Chain A: I.55, A.57, T.58 Chain B: F.160, Q.229, I.289 9 PLIP interactions: 5 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:Q.229, B:Q.229, A:T.58 Water bridges: B:N.255, B:N.255, B:N.255, A:T.58, A:T.58, A:D.59 AZI.5: 5 residues within 4Å: Chain A: K.290, C.291 Chain B: A.6, A.7, R.8 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.8, B:R.8 Water bridges: B:A.7, B:E.40 AZI.7: 6 residues within 4Å: Chain C: F.160, Q.229, I.289 Chain D: I.55, A.57, T.58 7 PLIP interactions: 2 interactions with chain D, 5 interactions with chain C Hydrogen bonds: D:T.58, C:Q.229 Water bridges: D:D.59, C:Q.229, C:N.255, C:N.255, C:N.255 AZI.8: 5 residues within 4Å: Chain C: A.6, A.7, R.8 Chain D: K.290, C.291 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:A.6, C:A.7, C:R.8, C:R.8 Water bridges: C:E.40 AZI.10: 6 residues within 4Å: Chain C: I.55, A.57, T.58 Chain D: F.160, Q.229, I.289 7 PLIP interactions: 5 interactions with chain D, 2 interactions with chain C Hydrogen bonds: D:Q.229, D:Q.229, C:T.58 Water bridges: D:N.255, D:N.255, D:N.255, C:D.59 AZI.11: 5 residues within 4Å: Chain C: K.290, C.291 Chain D: A.6, A.7, R.8 5 PLIP interactions: 4 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:R.8, D:R.8, C:K.290 Water bridges: D:A.7, D:E.40

4 x NA: SODIUM ION(Non-functional Binders)

NA.3: 5 residues within 4Å: Chain A: I.89, Y.92, N.93, I.95, E.137 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:I.95, A:H.96, A:E.137 NA.6: 5 residues within 4Å: Chain B: I.89, Y.92, N.93, I.95, E.137 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:I.95, B:I.95, B:H.96 NA.9: 5 residues within 4Å: Chain C: I.89, Y.92, N.93, I.95, E.137 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:I.95, C:H.96 NA.12: 5 residues within 4Å: Chain D: I.89, Y.92, N.93, I.95, E.137 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:I.95, D:E.137

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gabison, L. et al., Azide inhibition of urate oxidase. Acta Crystallogr.,Sect.F (2014)

Release Date

2014-12-24

Peptides

Uricase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Uricase

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