SMTL ID : 4ylk.1

Crystal structure of DYRK1A in complex with 10-Chloro-substituted 11H-indolo[3,2-c]quinolone-6-carboxylic acid inhibitor 5s

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: R.201, R.204, E.242 Ligands: SO4.5 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.204 Salt bridges: A:R.201, A:R.204 SO4.2: 2 residues within 4Å: Chain A: K.69, K.70 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.70 Salt bridges: A:K.69 SO4.3: 3 residues within 4Å: Chain A: K.140, R.176, S.177 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.177 Water bridges: A:K.140, A:S.177, A:A.178 Salt bridges: A:K.140, A:R.176 SO4.4: 2 residues within 4Å: Chain A: Y.21, K.69 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.69 SO4.5: 5 residues within 4Å: Chain A: N.241, E.242, V.243, K.269 Ligands: SO4.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.242, A:V.243 Salt bridges: A:K.269 SO4.6: 2 residues within 4Å: Chain A: K.94, Y.95 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.95 Salt bridges: A:K.94

12 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.7: 7 residues within 4Å: Chain A: P.155, E.156, L.157, S.158, Q.189, L.190, G.191 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.191 Water bridges: A:P.155, A:E.156, A:E.156, A:S.158 EDO.8: 3 residues within 4Å: Chain A: K.101, R.102 Ligands: EDO.9 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.102 Water bridges: A:R.34, A:R.34, A:R.34, A:K.101, A:R.102 EDO.9: 6 residues within 4Å: Chain A: E.57, E.59, H.99, K.101, R.102 Ligands: EDO.8 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.99, A:R.102 Water bridges: A:E.59, A:K.101 EDO.10: 3 residues within 4Å: Chain A: K.51, M.116 Ligands: EDO.11 3 PLIP interactions: 3 interactions with chain A Water bridges: A:K.51, A:K.51, A:K.51 EDO.11: 6 residues within 4Å: Chain A: M.116, L.117, S.118, C.172, P.174 Ligands: EDO.10 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.117 EDO.12: 2 residues within 4Å: Chain A: S.134, N.136 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.134, A:S.134, A:N.136 Water bridges: A:S.134 EDO.13: 4 residues within 4Å: Chain A: N.74, Q.75, I.78, Y.195 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.195, A:Y.195 Water bridges: A:Q.75 EDO.14: 5 residues within 4Å: Chain A: P.213, Y.214, D.215, P.340, K.341 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.341 Water bridges: A:D.215 EDO.15: 5 residues within 4Å: Chain A: T.342, R.343, I.344, Q.345, Y.348 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.342, A:Q.345 Water bridges: A:D.337 EDO.16: 3 residues within 4Å: Chain A: P.257, A.258, H.259 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:A.258, A:H.259 Water bridges: A:I.255, A:P.256, A:P.256 EDO.17: 3 residues within 4Å: Chain A: Y.16, F.106, R.107 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.16, A:R.107 EDO.18: 3 residues within 4Å: Chain A: D.330, L.333, R.334 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.330, A:R.334 Water bridges: A:L.333

1 x 4E2: 10-chloro-2-iodo-11H-indolo[3,2-c]quinoline-6-carboxylic acid(Non-covalent)

4E2.19: 15 residues within 4Å: Chain A: I.41, G.42, K.43, F.46, V.49, A.62, K.64, V.98, F.114, E.115, L.117, L.170, V.182, D.183 Ligands: IOD.20 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:F.46, A:V.49, A:A.62, A:V.98, A:F.114, A:F.114, A:L.117, A:L.170 Water bridges: A:D.183 Salt bridges: A:K.64 Halogen bonds: A:L.117

1 x IOD: IODIDE ION(Non-functional Binders)

IOD.20: 3 residues within 4Å: Chain A: G.42, K.43 Ligands: 4E2.19 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Falke, H. et al., 10-Iodo-11H-indolo[3,2-c]quinoline-6-carboxylic Acids Are Selective Inhibitors of DYRK1A. J.Med.Chem. (2015)

Release Date

2015-03-25

Peptides

Dual specificity tyrosine-phosphorylation-regulated kinase 1A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Dual specificity tyrosine-phosphorylation-regulated kinase 1A

Related Entries With Identical Sequence