SMTL ID : 4yll.1

Crystal structure of DYRK1AA in complex with 10-Bromo-substituted 11H-indolo[3,2-c]quinolone-6-carboxylic acid inhibitor 5t

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: K.140, R.176, S.177 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.177 Water bridges: A:K.140, A:A.178 Salt bridges: A:K.140, A:R.176 SO4.2: 3 residues within 4Å: Chain A: R.201, R.204, E.242 5 PLIP interactions: 5 interactions with chain A Water bridges: A:R.201, A:E.242, A:E.242 Salt bridges: A:R.201, A:R.204 SO4.3: 1 residues within 4Å: Chain A: S.45 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.45 SO4.4: 4 residues within 4Å: Chain A: N.20, G.44, S.45, K.67 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.20 Water bridges: A:S.45 Salt bridges: A:K.67 SO4.5: 3 residues within 4Å: Chain A: Y.122, R.126, F.130 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.122 Salt bridges: A:R.126

9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.6: 3 residues within 4Å: Chain A: D.330, L.333, R.334 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.330, A:R.334 Water bridges: A:L.333 EDO.7: 2 residues within 4Å: Chain A: N.127, T.128 1 PLIP interactions: 1 interactions with chain A Water bridges: A:T.128 EDO.8: 2 residues within 4Å: Chain A: S.134, N.136 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.134, A:S.134, A:N.136, A:L.137 Water bridges: A:S.134 EDO.9: 2 residues within 4Å: Chain A: H.99, K.101 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.101, A:K.101 Water bridges: A:H.99, A:K.101, A:R.102 EDO.10: 1 residues within 4Å: Chain A: K.51 2 PLIP interactions: 2 interactions with chain A Water bridges: A:K.51, A:K.51 EDO.11: 4 residues within 4Å: Chain A: N.74, Q.75, I.78, Y.195 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.195, A:Y.195 Water bridges: A:Q.75, A:Q.75 EDO.12: 6 residues within 4Å: Chain A: K.341, T.342, R.343, I.344, Q.345, Y.348 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.342, A:Q.345 Water bridges: A:Q.345 EDO.13: 1 residues within 4Å: Chain A: R.107 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.107 EDO.14: 2 residues within 4Å: Chain A: K.101, R.102 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:E.57, A:R.102 Water bridges: A:R.34, A:R.34, A:R.34, A:E.57, A:E.57, A:R.102

1 x 4E3: 10-bromo-2-iodo-11H-indolo[3,2-c]quinoline-6-carboxylic acid(Non-covalent)

4E3.15: 14 residues within 4Å: Chain A: I.41, G.42, K.43, F.46, V.49, A.62, K.64, V.98, F.114, E.115, L.117, L.170, V.182, D.183 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:F.46, A:V.49, A:A.62, A:V.98, A:F.114, A:F.114, A:L.117, A:L.170 Water bridges: A:D.183 Salt bridges: A:K.64 Halogen bonds: A:L.117

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Falke, H. et al., 10-Iodo-11H-indolo[3,2-c]quinoline-6-carboxylic Acids Are Selective Inhibitors of DYRK1A. J.Med.Chem. (2015)

Release Date

2015-03-25

Peptides

Dual specificity tyrosine-phosphorylation-regulated kinase 1A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Dual specificity tyrosine-phosphorylation-regulated kinase 1A

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