SMTL ID : 5ai5.1

ligand complex structure of soluble epoxide hydrolase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.28 Å

Oligo State

homo-dimer

Ligands

4 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.1: 5 residues within 4Å: Chain A: K.145, F.148, D.149, F.150, L.151 2 PLIP interactions: 2 interactions with chain A Water bridges: A:K.145, A:L.151 DMS.2: 6 residues within 4Å: Chain A: L.418, M.420, V.499, H.525, W.526 Ligands: BSU.3 1 PLIP interactions: 1 interactions with chain A Water bridges: A:L.418 DMS.4: 5 residues within 4Å: Chain B: K.145, F.148, D.149, F.150, L.151 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Water bridges: B:K.145, B:L.151, A:D.323, A:D.323 DMS.5: 6 residues within 4Å: Chain B: L.418, M.420, V.499, H.525, W.526 Ligands: BSU.6 1 PLIP interactions: 1 interactions with chain B Water bridges: B:L.418

2 x BSU: 1,3-DIPHENYLUREA(Non-covalent)

BSU.3: 12 residues within 4Å: Chain A: F.268, D.336, W.337, M.340, Y.384, Q.385, L.409, M.420, Y.467, H.525, W.526 Ligands: DMS.2 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.268, A:L.409, A:W.526 Hydrogen bonds: A:D.336, A:H.525 pi-Stacking: A:W.337, A:W.337, A:H.525 BSU.6: 12 residues within 4Å: Chain B: F.268, D.336, W.337, M.340, Y.384, Q.385, L.409, M.420, Y.467, H.525, W.526 Ligands: DMS.5 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:F.268, B:L.409, B:W.526 Hydrogen bonds: B:D.336, B:Y.384, B:Y.467, B:H.525 pi-Stacking: B:W.337, B:W.337, B:H.525

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Oster, L. et al., Successful Generation of Structural Information for Fragment-Based Drug Discovery. Drug Discov Today (2015)

Release Date

2015-05-13

Peptides

BIFUNCTIONAL EPOXIDE HYDROLASE 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

BIFUNCTIONAL EPOXIDE HYDROLASE 2

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