SMTL ID : 5aib.1

ligand complex structure of soluble epoxide hydrolase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-dimer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: D.336, W.337, M.340, T.361, Q.385, Y.467 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.336, A:T.361, A:Q.385, A:Y.467 Water bridges: A:Y.384, A:Y.384 SO4.2: 4 residues within 4Å: Chain A: K.145, F.148, F.150, L.151 8 PLIP interactions: 6 interactions with chain A, 2 interactions with chain B Water bridges: A:K.145, A:K.145, A:F.148, A:L.151, A:L.151, B:D.323, B:D.323 Salt bridges: A:K.145 SO4.3: 7 residues within 4Å: Chain A: L.229, Y.277, R.441, M.442, V.443, T.444, E.447 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.277, A:Y.277, A:R.441 SO4.5: 6 residues within 4Å: Chain B: D.336, W.337, M.340, T.361, Q.385, Y.467 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.336, B:Q.385 SO4.6: 4 residues within 4Å: Chain B: K.145, F.148, F.150, L.151 6 PLIP interactions: 6 interactions with chain B Water bridges: B:K.145, B:K.145, B:F.148, B:L.151, B:L.151 Salt bridges: B:K.145 SO4.7: 7 residues within 4Å: Chain B: L.229, Y.277, R.441, M.442, V.443, T.444, E.447 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Y.277, B:Y.277, B:R.441

2 x KJU: 6-chloro-2H-1,4-benzoxazin-3(4H)-one(Non-covalent)

KJU.4: 7 residues within 4Å: Chain A: F.268, Y.384, M.420, D.497, V.499, H.525, W.526 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:Y.384, A:W.526 Hydrogen bonds: A:W.526 Water bridges: A:V.499 pi-Stacking: A:H.525 KJU.8: 7 residues within 4Å: Chain B: F.268, Y.384, M.420, D.497, V.499, H.525, W.526 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:Y.384, B:W.526 Hydrogen bonds: B:W.526 Water bridges: B:V.499 pi-Stacking: B:H.525

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Oster, L. et al., Successful Generation of Structural Information for Fragment-Based Drug Discovery. Drug Discov Today (2015)

Release Date

2015-05-13

Peptides

BIFUNCTIONAL EPOXIDE HYDROLASE 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

BIFUNCTIONAL EPOXIDE HYDROLASE 2

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