SMTL ID : 5aic.1

ligand complex structure of soluble epoxide hydrolase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.89 Å

Oligo State

homo-dimer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: D.336, W.337, M.340, T.361, Y.467, L.500 2 PLIP interactions: 2 interactions with chain A Water bridges: A:D.336, A:D.336 SO4.4: 5 residues within 4Å: Chain B: K.145, M.146, F.148, F.150, L.151 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:K.145 Water bridges: B:L.151 Salt bridges: B:K.145 SO4.5: 6 residues within 4Å: Chain B: D.336, W.337, M.340, T.361, Y.467, L.500 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.361 Water bridges: B:D.336, B:Y.467 SO4.8: 5 residues within 4Å: Chain A: K.145, M.146, F.148, F.150, L.151 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.145 Water bridges: A:L.151 Salt bridges: A:K.145

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 3 residues within 4Å: Chain A: T.493, R.517, H.519 2 PLIP interactions: 2 interactions with chain A Water bridges: A:Q.506, A:R.517 PEG.6: 3 residues within 4Å: Chain B: T.493, R.517, H.519 2 PLIP interactions: 2 interactions with chain B Water bridges: B:Q.506, B:R.517

2 x TGX: 7-methyl-2H-1,4-benzothiazin-3(4H)-one(Non-covalent)

TGX.3: 8 residues within 4Å: Chain A: F.268, Y.384, M.420, D.497, F.498, V.499, H.525, W.526 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.499, A:W.526 Hydrogen bonds: A:D.497, A:F.498, A:V.499 Water bridges: A:H.525 pi-Stacking: A:H.525 TGX.7: 8 residues within 4Å: Chain B: F.268, Y.384, M.420, D.497, F.498, V.499, H.525, W.526 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:V.499, B:W.526 Hydrogen bonds: B:D.497, B:D.497, B:F.498, B:V.499 Water bridges: B:H.525 pi-Stacking: B:H.525

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Oster, L. et al., Successful Generation of Structural Information for Fragment-Based Drug Discovery. Drug Discov Today (2015)

Release Date

2015-05-13

Peptides

BIFUNCTIONAL EPOXIDE HYDROLASE 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

BIFUNCTIONAL EPOXIDE HYDROLASE 2

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