SMTL ID : 5akl.1

ligand complex structure of soluble epoxide hydrolase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain A: L.229, Y.277, R.441, M.442, V.443, T.444, E.447 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.277, A:R.441 Water bridges: A:Y.277, A:E.447 SO4.2: 5 residues within 4Å: Chain A: C.142, E.143, M.146, H.147, T.231 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.231 Water bridges: A:Q.284 Salt bridges: A:H.147 SO4.3: 4 residues within 4Å: Chain A: L.4, K.116, G.117, F.118 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.4, A:K.116 SO4.5: 5 residues within 4Å: Chain B: K.145, M.146, F.148, F.150, L.151 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:K.145 Water bridges: B:L.151, B:L.151 Salt bridges: B:K.145 SO4.6: 7 residues within 4Å: Chain B: L.229, Y.277, R.441, M.442, V.443, T.444, E.447 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.441 Water bridges: B:Y.277, B:E.447 SO4.7: 5 residues within 4Å: Chain B: C.142, E.143, M.146, H.147, T.231 2 PLIP interactions: 2 interactions with chain B Water bridges: B:Q.284 Salt bridges: B:H.147 SO4.8: 4 residues within 4Å: Chain B: L.4, K.116, G.117, F.118 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:L.4, B:K.116 SO4.10: 5 residues within 4Å: Chain A: K.145, M.146, F.148, F.150, L.151 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:K.145 Water bridges: A:L.151, A:L.151, B:D.323 Salt bridges: A:K.145

2 x 6N8: N-(3,3-DIPHENYLPROPYL)PYRROLIDINE-1-CARBOXAMIDE(Non-covalent)

6N8.4: 15 residues within 4Å: Chain A: F.268, D.336, W.337, M.340, Y.384, Q.385, F.388, L.409, M.420, L.429, Y.467, D.497, V.499, H.525, W.526 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:F.268, A:F.268, A:Y.384, A:Y.384, A:F.388, A:L.409, A:L.429, A:V.499, A:V.499, A:H.525, A:W.526 Hydrogen bonds: A:D.336, A:Y.384, A:Q.385, A:Y.467 pi-Stacking: A:W.337, A:W.337, A:H.525 6N8.9: 15 residues within 4Å: Chain B: F.268, D.336, W.337, M.340, Y.384, Q.385, F.388, L.409, M.420, L.429, Y.467, D.497, V.499, H.525, W.526 16 PLIP interactions: 16 interactions with chain B Hydrophobic interactions: B:F.268, B:F.268, B:Y.384, B:Y.384, B:F.388, B:L.409, B:L.429, B:V.499, B:V.499, B:H.525, B:W.526 Hydrogen bonds: B:D.336, B:Q.385 pi-Stacking: B:W.337, B:W.337, B:H.525

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Oster, L. et al., Successful Generation of Structural Information for Fragment-Based Drug Discovery. Drug Discov Today (2015)

Release Date

2015-05-13

Peptides

BIFUNCTIONAL EPOXIDE HYDROLASE 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

BIFUNCTIONAL EPOXIDE HYDROLASE 2

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