SMTL ID : 5alj.1

ligand complex structure of soluble epoxide hydrolase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain A: Y.384, L.409, L.418, V.499, H.525, W.526 Ligands: T5J.5 2 PLIP interactions: 2 interactions with chain A Water bridges: A:H.525 Salt bridges: A:H.525 SO4.2: 7 residues within 4Å: Chain A: L.229, Y.277, R.441, M.442, V.443, T.444, E.447 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.277, A:Y.277, A:R.441 SO4.3: 5 residues within 4Å: Chain A: L.4, R.5, K.116, G.117, F.118 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.4, A:K.116 SO4.6: 7 residues within 4Å: Chain B: Y.384, L.409, L.418, V.499, H.525, W.526 Ligands: T5J.10 2 PLIP interactions: 2 interactions with chain B Water bridges: B:H.525 Salt bridges: B:H.525 SO4.7: 7 residues within 4Å: Chain B: L.229, Y.277, R.441, M.442, V.443, T.444, E.447 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Y.277, B:Y.277, B:R.441 SO4.8: 5 residues within 4Å: Chain B: L.4, R.5, K.116, G.117, F.118 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:L.4, B:K.116

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 6 residues within 4Å: Chain A: K.145, M.146, F.148, D.149, F.150, L.151 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:F.150 Water bridges: A:K.145, A:K.145, A:F.148, A:L.151 GOL.9: 6 residues within 4Å: Chain B: K.145, M.146, F.148, D.149, F.150, L.151 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:F.150 Water bridges: B:K.145, B:K.145, B:F.148, B:L.151

2 x T5J: 2-(3-fluoro-4-methyl-anilino)-4-methyl-quinolin-5-ol(Non-covalent)

T5J.5: 11 residues within 4Å: Chain A: F.268, D.336, W.337, F.382, Y.384, Q.385, Y.467, M.470, V.499, W.526 Ligands: SO4.1 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:W.337, A:W.337, A:Y.384, A:Y.384, A:Q.385, A:Y.467, A:V.499 Hydrogen bonds: A:D.336, A:Y.467 pi-Stacking: A:W.337, A:F.382, A:Y.384 T5J.10: 11 residues within 4Å: Chain B: F.268, D.336, W.337, F.382, Y.384, Q.385, Y.467, M.470, V.499, W.526 Ligands: SO4.6 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:W.337, B:W.337, B:Y.384, B:Y.384, B:Q.385, B:Y.467, B:V.499 Hydrogen bonds: B:D.336 pi-Stacking: B:W.337, B:F.382, B:Y.384

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Oster, L. et al., Successful Generation of Structural Information for Fragment-Based Drug Discovery. Drug Discov Today (2015)

Release Date

2015-05-13

Peptides

BIFUNCTIONAL EPOXIDE HYDROLASE 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

BIFUNCTIONAL EPOXIDE HYDROLASE 2

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