SMTL ID : 5alk.1

ligand complex structure of soluble epoxide hydrolase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.33 Å

Oligo State

homo-dimer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: D.336, W.337, T.361, Q.385, Y.467, L.500 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.336, A:Q.385 SO4.2: 6 residues within 4Å: Chain A: L.229, Y.277, R.441, M.442, V.443, T.444 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.277, A:R.441 SO4.5: 6 residues within 4Å: Chain B: D.336, W.337, T.361, Q.385, Y.467, L.500 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:D.336, B:T.361, B:Y.384, B:Q.385, B:Y.467 SO4.6: 6 residues within 4Å: Chain B: L.229, Y.277, R.441, M.442, V.443, T.444 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Y.277, B:R.441

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3: 4 residues within 4Å: Chain A: K.145, F.148, F.150, L.151 1 PLIP interactions: 1 interactions with chain A Water bridges: A:L.151 DMS.7: 4 residues within 4Å: Chain B: K.145, F.148, F.150, L.151 1 PLIP interactions: 1 interactions with chain B Water bridges: B:L.151

2 x WMR: 5-butyl-8,8-dimethyl-3,6,8,9-tetrahydropyrazolo[3,4-b]thiopyrano[4,3-d]pyridin-1-amine(Non-covalent)

WMR.4: 13 residues within 4Å: Chain A: F.268, D.336, Y.384, F.388, L.409, M.420, L.429, Y.467, D.497, V.499, L.500, H.525, W.526 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:F.268, A:Y.384, A:F.388, A:L.409, A:W.526 Hydrogen bonds: A:Y.467, A:D.497, A:L.500 Water bridges: A:Y.467, A:F.498, A:V.499 pi-Stacking: A:H.525, A:H.525 WMR.8: 13 residues within 4Å: Chain B: F.268, D.336, Y.384, F.388, L.409, M.420, L.429, Y.467, D.497, V.499, L.500, H.525, W.526 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:F.268, B:Y.384, B:F.388, B:L.409, B:W.526 Hydrogen bonds: B:Y.467, B:Y.467, B:D.497, B:L.500 Water bridges: B:F.498, B:V.499 pi-Stacking: B:H.525, B:H.525

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Oster, L. et al., Successful Generation of Structural Information for Fragment-Based Drug Discovery. Drug Discov Today (2015)

Release Date

2015-05-13

Peptides

BIFUNCTIONAL EPOXIDE HYDROLASE 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

BIFUNCTIONAL EPOXIDE HYDROLASE 2

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