SMTL ID : 5alo.1

ligand complex structure of soluble epoxide hydrolase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

6 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.1: 5 residues within 4Å: Chain A: D.336, W.337, M.340, F.382, Q.385 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.385 Salt bridges: A:D.336 pi-Cation interactions: A:W.337, A:W.337 DMS.2: 6 residues within 4Å: Chain A: L.229, Y.277, R.441, M.442, V.443, T.444 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:E.447 DMS.3: 6 residues within 4Å: Chain A: K.145, M.146, F.148, D.149, F.150, L.151 No protein-ligand interaction detected (PLIP) DMS.5: 5 residues within 4Å: Chain B: D.336, W.337, M.340, F.382, Q.385 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Q.385 Salt bridges: B:D.336 pi-Cation interactions: B:W.337, B:W.337 DMS.6: 6 residues within 4Å: Chain B: L.229, Y.277, R.441, M.442, V.443, T.444 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Y.277 Salt bridges: B:E.447 DMS.7: 6 residues within 4Å: Chain B: K.145, M.146, F.148, D.149, F.150, L.151 No protein-ligand interaction detected (PLIP)

2 x A0J: 3-BENZYL-3-METHYL-5-(1-METHYLPYRAZOL-4-YL)INDOLIN-2-ONE(Non-covalent)

A0J.4: 9 residues within 4Å: Chain A: W.337, A.366, P.372, I.376, F.382, Q.385, N.469, M.470, N.473 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:A.366, A:P.372, A:I.376 Hydrogen bonds: A:N.473 Water bridges: A:W.466, A:Y.467 pi-Stacking: A:W.474 A0J.8: 9 residues within 4Å: Chain B: W.337, A.366, P.372, I.376, F.382, Q.385, N.469, M.470, N.473 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:A.366, B:P.372, B:I.376 Hydrogen bonds: B:N.473 Water bridges: B:W.466, B:Y.467 pi-Stacking: B:W.474

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Oster, L. et al., Successful Generation of Structural Information for Fragment-Based Drug Discovery. Drug Discov Today (2015)

Release Date

2015-05-13

Peptides

BIFUNCTIONAL EPOXIDE HYDROLASE 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

BIFUNCTIONAL EPOXIDE HYDROLASE 2

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