SMTL ID : 5alr.1

ligand complex structure of soluble epoxide hydrolase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-dimer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: L.418, M.420, V.499, H.525, W.526 Ligands: 8TM.4 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:H.525 SO4.2: 4 residues within 4Å: Chain A: K.145, M.146, F.148, D.149 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:F.148 Salt bridges: A:K.145 SO4.3: 7 residues within 4Å: Chain A: L.229, Y.277, R.441, M.442, V.443, T.444, E.447 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.277, A:R.441 SO4.5: 6 residues within 4Å: Chain B: L.418, M.420, V.499, H.525, W.526 Ligands: 8TM.8 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:H.525 SO4.6: 4 residues within 4Å: Chain B: K.145, M.146, F.148, D.149 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:F.148 Salt bridges: B:K.145 Water bridges: A:D.323 SO4.7: 7 residues within 4Å: Chain B: L.229, Y.277, R.441, M.442, V.443, T.444, E.447 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Y.277, B:R.441, B:T.444

2 x 8TM: N-[4-(TRIFLUOROMETHYLSULFANYL)PHENYL]QUINAZOLIN-4-AMINE(Non-covalent)

8TM.4: 16 residues within 4Å: Chain A: F.268, D.336, W.337, M.340, T.361, Y.384, Q.385, F.388, L.409, L.418, L.429, Y.467, V.499, L.500, H.525 Ligands: SO4.1 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:T.361, A:Y.384, A:V.499, A:V.499, A:L.500 Hydrogen bonds: A:D.336, A:Q.385 pi-Stacking: A:W.337, A:W.337 8TM.8: 16 residues within 4Å: Chain B: F.268, D.336, W.337, M.340, T.361, Y.384, Q.385, F.388, L.409, L.418, L.429, Y.467, V.499, L.500, H.525 Ligands: SO4.5 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:T.361, B:Y.384, B:V.499, B:V.499, B:L.500 Hydrogen bonds: B:D.336, B:Y.384, B:Q.385, B:Y.467 pi-Stacking: B:W.337, B:W.337

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Oster, L. et al., Successful Generation of Structural Information for Fragment-Based Drug Discovery. Drug Discov Today (2015)

Release Date

2015-05-13

Peptides

BIFUNCTIONAL EPOXIDE HYDROLASE 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

BIFUNCTIONAL EPOXIDE HYDROLASE 2

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