SMTL ID : 5als.1

ligand complex structure of soluble epoxide hydrolase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.57 Å

Oligo State

homo-dimer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: L.229, Y.277, R.441, M.442, V.443, T.444 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.277 Water bridges: A:S.440, A:V.443 SO4.2: 7 residues within 4Å: Chain A: V.417, L.418, M.420, V.499, H.525, W.526 Ligands: 5DQ.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.417 Salt bridges: A:H.525 SO4.3: 4 residues within 4Å: Chain A: K.145, M.146, F.148, D.149 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:F.148 Salt bridges: A:K.145 SO4.5: 6 residues within 4Å: Chain B: L.229, Y.277, R.441, M.442, V.443, T.444 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Y.277, B:Y.277 Water bridges: B:S.440, B:V.443 SO4.6: 7 residues within 4Å: Chain B: V.417, L.418, M.420, V.499, H.525, W.526 Ligands: 5DQ.8 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:V.417 Salt bridges: B:H.525 SO4.7: 4 residues within 4Å: Chain B: K.145, M.146, F.148, D.149 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:F.148 Salt bridges: B:K.145

2 x 5DQ: N-CYCLOPENTYL-2-[4-(TRIFLUOROMETHYL)PHENYL]-3H-IMIDAZO[4,5-B]PYRIDINE-7-SULFONAMIDE(Non-covalent)

5DQ.4: 14 residues within 4Å: Chain A: F.268, D.336, W.337, M.340, Y.384, Q.385, L.409, M.420, Y.467, M.470, V.499, M.504, W.526 Ligands: SO4.2 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:F.268, A:Y.384, A:V.499 Hydrogen bonds: A:Y.384, A:Y.384, A:Q.385 pi-Stacking: A:W.337, A:W.337, A:W.337 5DQ.8: 14 residues within 4Å: Chain B: F.268, D.336, W.337, M.340, Y.384, Q.385, L.409, M.420, Y.467, M.470, V.499, M.504, W.526 Ligands: SO4.6 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:F.268, B:Y.384, B:V.499 Hydrogen bonds: B:Y.384, B:Y.384, B:Y.384, B:Q.385, B:Y.467 pi-Stacking: B:W.337, B:W.337, B:W.337

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Oster, L. et al., Successful Generation of Structural Information for Fragment-Based Drug Discovery. Drug Discov Today (2015)

Release Date

2015-05-13

Peptides

BIFUNCTIONAL EPOXIDE HYDROLASE 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

BIFUNCTIONAL EPOXIDE HYDROLASE 2

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