SMTL ID : 5alx.1

ligand complex structure of soluble epoxide hydrolase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.23 Å

Oligo State

homo-dimer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain A: L.229, Y.277, R.441, M.442, V.443, T.444, E.447 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:M.442 Water bridges: A:Y.277, A:Y.277 SO4.5: 7 residues within 4Å: Chain B: L.229, Y.277, R.441, M.442, V.443, T.444, E.447 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Y.277, B:M.442

4 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 5 residues within 4Å: Chain A: D.336, W.337, M.340, T.361, Q.385 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:D.336 pi-Cation interactions: A:W.337, A:W.337 DMS.4: 5 residues within 4Å: Chain B: K.145, F.148, D.149, F.150, L.151 No protein-ligand interaction detected (PLIP) DMS.6: 5 residues within 4Å: Chain B: D.336, W.337, M.340, T.361, Q.385 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:T.361 Salt bridges: B:D.336 pi-Cation interactions: B:W.337, B:W.337 DMS.8: 5 residues within 4Å: Chain A: K.145, F.148, D.149, F.150, L.151 No protein-ligand interaction detected (PLIP)

2 x DUL: 5-(3-ethylsulfanylphenyl)thiophene-2-carboxamide(Non-covalent)

DUL.3: 12 residues within 4Å: Chain A: F.268, S.408, L.409, R.411, S.416, V.417, L.418, M.420, D.497, V.499, H.525, W.526 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.499, A:V.499, A:H.525 Hydrogen bonds: A:V.417, A:L.418, A:L.418 pi-Stacking: A:H.525 DUL.7: 12 residues within 4Å: Chain B: F.268, S.408, L.409, R.411, S.416, V.417, L.418, M.420, D.497, V.499, H.525, W.526 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:V.499, B:V.499, B:H.525 Hydrogen bonds: B:V.417, B:L.418, B:L.418 pi-Stacking: B:H.525

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Oster, L. et al., Successful Generation of Structural Information for Fragment-Based Drug Discovery. Drug Discov Today (2015)

Release Date

2015-05-13

Peptides

BIFUNCTIONAL EPOXIDE HYDROLASE 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

BIFUNCTIONAL EPOXIDE HYDROLASE 2

Related Entries With Identical Sequence