SMTL ID : 5alz.1

ligand complex structure of soluble epoxide hydrolase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: K.145, M.146, F.148, D.149, F.150, L.151 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.145, A:D.149 Water bridges: A:L.151 SO4.2: 7 residues within 4Å: Chain A: L.229, Y.277, R.441, M.442, V.443, T.444, E.447 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.277, A:R.441 Water bridges: A:Y.277, A:Y.277, A:Y.277 SO4.3: 5 residues within 4Å: Chain A: K.496, D.497, F.498, V.499, H.525 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.497, A:F.498, A:V.499, A:H.525 SO4.5: 6 residues within 4Å: Chain B: K.145, M.146, F.148, D.149, F.150, L.151 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:K.145, B:D.149 Water bridges: B:L.151 SO4.6: 7 residues within 4Å: Chain B: L.229, Y.277, R.441, M.442, V.443, T.444, E.447 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Y.277, B:Y.277, B:R.441 SO4.7: 5 residues within 4Å: Chain B: K.496, D.497, F.498, V.499, H.525 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:F.498, B:V.499, B:H.525

2 x XQ9: 1-(1-adamantyl)-3-(1-methylsulfonylpiperidin-4-yl)urea(Non-covalent)

XQ9.4: 15 residues within 4Å: Chain A: F.268, D.336, W.337, M.340, T.361, F.382, Y.384, Q.385, F.388, L.409, M.420, Y.467, L.500, H.525, W.526 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:F.268, A:W.337, A:Y.384, A:Y.384, A:F.388, A:L.409, A:L.500, A:W.526 Hydrogen bonds: A:D.336, A:Y.384, A:Y.467, A:H.525 XQ9.8: 15 residues within 4Å: Chain B: F.268, D.336, W.337, M.340, T.361, F.382, Y.384, Q.385, F.388, L.409, M.420, Y.467, L.500, H.525, W.526 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:F.268, B:W.337, B:Y.384, B:Y.384, B:F.388, B:L.409, B:L.500, B:W.526 Hydrogen bonds: B:D.336, B:H.525

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Oster, L. et al., Successful Generation of Structural Information for Fragment-Based Drug Discovery. Drug Discov Today (2015)

Release Date

2015-05-13

Peptides

BIFUNCTIONAL EPOXIDE HYDROLASE 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

BIFUNCTIONAL EPOXIDE HYDROLASE 2

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