- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.65 Å
- Oligo State
- hetero-6-6-6-6-mer
- Ligands
- 6 x SPH: SPHINGOSINE(Non-covalent)
- 12 x K: POTASSIUM ION(Non-covalent)
K.2: 4 residues within 4Å:- Chain A: T.28, A.29, N.31, N.71
2 PLIP interactions:2 interactions with chain A- Metal complexes: A:T.28, A:A.29
K.5: 4 residues within 4Å:- Chain A: Q.189
- Chain C: V.20, S.21
- Chain G: P.8
1 PLIP interactions:1 interactions with chain G- Metal complexes: G:P.8
K.11: 4 residues within 4Å:- Chain E: T.28, A.29, N.31, N.71
2 PLIP interactions:2 interactions with chain E- Metal complexes: E:T.28, E:A.29
K.14: 3 residues within 4Å:- Chain E: Q.189
- Chain G: V.20, S.21
No protein-ligand interaction detected (PLIP)K.20: 4 residues within 4Å:- Chain I: T.28, A.29, N.31, N.71
2 PLIP interactions:2 interactions with chain I- Metal complexes: I:T.28, I:A.29
K.23: 3 residues within 4Å:- Chain I: Q.189
- Chain K: V.20, S.21
No protein-ligand interaction detected (PLIP)K.29: 4 residues within 4Å:- Chain M: T.28, A.29, N.31, N.71
2 PLIP interactions:2 interactions with chain M- Metal complexes: M:T.28, M:A.29
K.32: 4 residues within 4Å:- Chain K: P.8
- Chain M: Q.189
- Chain O: V.20, S.21
1 PLIP interactions:1 interactions with chain K- Metal complexes: K:P.8
K.38: 4 residues within 4Å:- Chain Q: T.28, A.29, N.31, N.71
2 PLIP interactions:2 interactions with chain Q- Metal complexes: Q:T.28, Q:A.29
K.41: 4 residues within 4Å:- Chain Q: Q.189
- Chain S: V.20, S.21
- Chain W: P.8
1 PLIP interactions:1 interactions with chain W- Metal complexes: W:P.8
K.47: 4 residues within 4Å:- Chain U: T.28, A.29, N.31, N.71
2 PLIP interactions:2 interactions with chain U- Metal complexes: U:T.28, U:A.29
K.50: 3 residues within 4Å:- Chain U: Q.189
- Chain W: V.20, S.21
No protein-ligand interaction detected (PLIP)- 6 x NA: SODIUM ION(Non-functional Binders)
NA.3: 8 residues within 4Å:- Chain A: V.44, P.45, L.47, Q.48
- Chain D: H.62, E.63, A.65, P.67
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:P.45, A:Q.48
NA.12: 8 residues within 4Å:- Chain E: V.44, P.45, L.47, Q.48
- Chain H: H.62, E.63, A.65, P.67
2 PLIP interactions:1 interactions with chain E, 1 interactions with chain H- Hydrogen bonds: E:Q.48, H:H.62
NA.21: 8 residues within 4Å:- Chain I: V.44, P.45, L.47, Q.48
- Chain L: H.62, E.63, A.65, P.67
2 PLIP interactions:1 interactions with chain I, 1 interactions with chain L- Hydrogen bonds: I:Q.48, L:A.65
NA.30: 8 residues within 4Å:- Chain M: V.44, P.45, L.47, Q.48
- Chain P: H.62, E.63, A.65, P.67
2 PLIP interactions:2 interactions with chain M- Hydrogen bonds: M:P.45, M:Q.48
NA.39: 8 residues within 4Å:- Chain Q: V.44, P.45, L.47, Q.48
- Chain T: H.62, E.63, A.65, P.67
2 PLIP interactions:1 interactions with chain Q, 1 interactions with chain T- Hydrogen bonds: Q:Q.48, T:A.65
NA.48: 8 residues within 4Å:- Chain U: V.44, P.45, L.47, Q.48
- Chain X: H.62, E.63, A.65, P.67
2 PLIP interactions:1 interactions with chain X, 1 interactions with chain U- Hydrogen bonds: X:H.62, U:Q.48
- 30 x CL: CHLORIDE ION(Non-functional Binders)
CL.4: 2 residues within 4Å:- Chain A: R.236
- Chain E: R.250
Ligand excluded by PLIPCL.6: 3 residues within 4Å:- Chain B: H.162, P.163, Y.164
Ligand excluded by PLIPCL.7: 7 residues within 4Å:- Chain C: D.89, P.90, G.91, R.92, W.111, H.180, A.181
Ligand excluded by PLIPCL.8: 1 residues within 4Å:- Chain C: G.1
Ligand excluded by PLIPCL.9: 7 residues within 4Å:- Chain C: G.27
- Chain D: N.15, K.34
- Chain E: Q.76, N.82
- Chain H: R.43, Q.44
Ligand excluded by PLIPCL.13: 1 residues within 4Å:- Chain E: R.236
Ligand excluded by PLIPCL.15: 3 residues within 4Å:- Chain F: H.162, P.163, Y.164
Ligand excluded by PLIPCL.16: 7 residues within 4Å:- Chain G: D.89, P.90, G.91, R.92, W.111, H.180, A.181
Ligand excluded by PLIPCL.17: 2 residues within 4Å:- Chain C: P.3
- Chain G: G.1
Ligand excluded by PLIPCL.18: 3 residues within 4Å:- Chain G: G.27
- Chain H: N.15, K.34
Ligand excluded by PLIPCL.22: 1 residues within 4Å:- Chain I: R.236
Ligand excluded by PLIPCL.24: 3 residues within 4Å:- Chain J: H.162, P.163, Y.164
Ligand excluded by PLIPCL.25: 7 residues within 4Å:- Chain K: D.89, P.90, G.91, R.92, W.111, H.180, A.181
Ligand excluded by PLIPCL.26: 2 residues within 4Å:- Chain K: G.1
- Chain O: P.3
Ligand excluded by PLIPCL.27: 3 residues within 4Å:- Chain K: G.27
- Chain L: N.15, K.34
Ligand excluded by PLIPCL.31: 2 residues within 4Å:- Chain I: R.250
- Chain M: R.236
Ligand excluded by PLIPCL.33: 3 residues within 4Å:- Chain N: H.162, P.163, Y.164
Ligand excluded by PLIPCL.34: 7 residues within 4Å:- Chain O: D.89, P.90, G.91, R.92, W.111, H.180, A.181
Ligand excluded by PLIPCL.35: 1 residues within 4Å:- Chain O: G.1
Ligand excluded by PLIPCL.36: 7 residues within 4Å:- Chain I: Q.76, N.82
- Chain L: R.43, Q.44
- Chain O: G.27
- Chain P: N.15, K.34
Ligand excluded by PLIPCL.40: 2 residues within 4Å:- Chain Q: R.236
- Chain U: R.250
Ligand excluded by PLIPCL.42: 3 residues within 4Å:- Chain R: H.162, P.163, Y.164
Ligand excluded by PLIPCL.43: 7 residues within 4Å:- Chain S: D.89, P.90, G.91, R.92, W.111, H.180, A.181
Ligand excluded by PLIPCL.44: 1 residues within 4Å:- Chain S: G.1
Ligand excluded by PLIPCL.45: 7 residues within 4Å:- Chain S: G.27
- Chain T: N.15, K.34
- Chain U: Q.76, N.82
- Chain X: R.43, Q.44
Ligand excluded by PLIPCL.49: 1 residues within 4Å:- Chain U: R.236
Ligand excluded by PLIPCL.51: 3 residues within 4Å:- Chain V: H.162, P.163, Y.164
Ligand excluded by PLIPCL.52: 7 residues within 4Å:- Chain W: D.89, P.90, G.91, R.92, W.111, H.180, A.181
Ligand excluded by PLIPCL.53: 2 residues within 4Å:- Chain S: P.3
- Chain W: G.1
Ligand excluded by PLIPCL.54: 3 residues within 4Å:- Chain W: G.27
- Chain X: N.15, K.34
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ren, J. et al., Structures of Coxsackievirus A16 Capsids with Native Antigenicity: Implications for Particle Expansion, Receptor Binding, and Immunogenicity. J.Virol. (2015)
- Release Date
- 2015-08-26
- Peptides
- VP1: AEIMQU
VP2: BFJNRV
VP3: CGKOSW
VP4: DHLPTX - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AE
AI
AM
AQ
AU
AB
BF
BJ
BN
BR
BV
BC
CG
CK
CO
CS
CW
CD
DH
DL
DP
DT
DX
D
SMTL ID : 5c4w.3 (3 other biounits)
Crystal structure of coxsackievirus A16
VP1
Toggle Identical (AEIMQU)VP2
Toggle Identical (BFJNRV)VP3
Toggle Identical (CGKOSW)VP4
Toggle Identical (DHLPTX)Related Entries With Identical Sequence
4jgy.1 | 4jgy.2 | 4jgy.3 | 4jgy.4 | 4jgy.5 | 4jgz.1 | 4jgz.2 | 4jgz.3 | 4jgz.4 | 4jgz.5 | 5abj.1 | 5abj.2 | 5abj.3 | 5abj.4 | 5c4w.1 | 5c4w.2 | 5c4w.4 | 5c8c.1 | 5c8c.2 | 5c8c.3 | 5c8c.4 | 5c9a.1 | 5c9a.2 | 5c9a.3 | 5c9a.4 | 5tsk.1 | 5tsk.2 | 5tsk.3 | 5tsk.4 | 5tsk.5 more...less...5tsk.6 | 5tsl.1 | 5tsl.2 | 5tsl.3 | 5tsl.4 | 5tsl.5 | 5tsl.6 | 6lha.1 | 6lha.2 | 6lha.3 | 6lha.4 | 6lhb.1 | 6lhb.2 | 6lhb.3 | 6lhb.4 | 6lhc.1 | 6lhc.2 | 6lhc.3 | 6lhc.4 | 6lhk.1 | 6lhk.2 | 6lhk.3 | 6lhk.4 | 6lhl.1 | 6lhl.2 | 6lhl.3 | 6lhl.4 | 6lho.1 | 6lho.2 | 6lho.3 | 6lho.4 | 6lhp.1 | 6lhp.2 | 6lhp.3 | 6lhp.4 | 6lhq.1 | 6lhq.2 | 6lhq.3 | 6lhq.4 | 8x98.1 | 8x98.2 | 8x98.3 | 8x98.4 | 8x99.1 | 8x99.2 | 8x99.3 | 8x99.4 | 8x9a.1 | 8x9a.2 | 8x9a.3 | 8x9a.4 | 8x9b.1