- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.75 Å
- Oligo State
- hetero-oligomer
- Ligands
- 6 x CL: CHLORIDE ION(Non-functional Binders)
- 6 x YM2: 1-[(3S)-5-[4-[(E)-ETHOXYIMINOMETHYL]PHENOXY]-3-METHYL-PENTYL]-3-PYRIDIN-4-YL-IMIDAZOLIDIN-2-ONE(Non-covalent)
YM2.2: 18 residues within 4Å:- Chain A: I.111, D.112, L.113, M.114, F.135, F.137, Y.155, P.177, S.178, V.179, V.190, V.192, M.195, Y.201, Q.202, W.203, N.228, M.230
12 PLIP interactions:12 interactions with chain A- Hydrophobic interactions: A:I.111, A:L.113, A:F.135, A:F.135, A:Y.155, A:Y.155, A:V.179, A:V.192, A:W.203, A:N.228, A:M.230
- Hydrogen bonds: A:L.113
YM2.5: 18 residues within 4Å:- Chain E: I.111, D.112, L.113, M.114, F.135, F.137, Y.155, P.177, S.178, V.179, V.190, V.192, M.195, Y.201, Q.202, W.203, N.228, M.230
12 PLIP interactions:12 interactions with chain E- Hydrophobic interactions: E:I.111, E:L.113, E:F.135, E:F.135, E:Y.155, E:Y.155, E:V.179, E:V.192, E:W.203, E:N.228, E:M.230
- Hydrogen bonds: E:L.113
YM2.8: 18 residues within 4Å:- Chain I: I.111, D.112, L.113, M.114, F.135, F.137, Y.155, P.177, S.178, V.179, V.190, V.192, M.195, Y.201, Q.202, W.203, N.228, M.230
12 PLIP interactions:12 interactions with chain I- Hydrophobic interactions: I:I.111, I:L.113, I:F.135, I:F.135, I:Y.155, I:Y.155, I:V.179, I:V.192, I:W.203, I:N.228, I:M.230
- Hydrogen bonds: I:L.113
YM2.11: 18 residues within 4Å:- Chain M: I.111, D.112, L.113, M.114, F.135, F.137, Y.155, P.177, S.178, V.179, V.190, V.192, M.195, Y.201, Q.202, W.203, N.228, M.230
12 PLIP interactions:12 interactions with chain M- Hydrophobic interactions: M:I.111, M:L.113, M:F.135, M:F.135, M:Y.155, M:Y.155, M:V.179, M:V.192, M:W.203, M:N.228, M:M.230
- Hydrogen bonds: M:L.113
YM2.14: 18 residues within 4Å:- Chain Q: I.111, D.112, L.113, M.114, F.135, F.137, Y.155, P.177, S.178, V.179, V.190, V.192, M.195, Y.201, Q.202, W.203, N.228, M.230
12 PLIP interactions:12 interactions with chain Q- Hydrophobic interactions: Q:I.111, Q:L.113, Q:F.135, Q:F.135, Q:Y.155, Q:Y.155, Q:V.179, Q:V.192, Q:W.203, Q:N.228, Q:M.230
- Hydrogen bonds: Q:L.113
YM2.17: 18 residues within 4Å:- Chain U: I.111, D.112, L.113, M.114, F.135, F.137, Y.155, P.177, S.178, V.179, V.190, V.192, M.195, Y.201, Q.202, W.203, N.228, M.230
12 PLIP interactions:12 interactions with chain U- Hydrophobic interactions: U:I.111, U:L.113, U:F.135, U:F.135, U:Y.155, U:Y.155, U:V.179, U:V.192, U:W.203, U:N.228, U:M.230
- Hydrogen bonds: U:L.113
- 6 x NA: SODIUM ION(Non-functional Binders)
NA.3: 2 residues within 4Å:- Chain C: P.8
- Chain G: E.5
No protein-ligand interaction detected (PLIP)NA.6: 4 residues within 4Å:- Chain A: Q.189
- Chain C: V.20, S.21
- Chain G: P.8
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:S.21
NA.9: 4 residues within 4Å:- Chain K: P.8
- Chain M: Q.189
- Chain O: V.20, S.21
1 PLIP interactions:1 interactions with chain O- Hydrogen bonds: O:V.20
NA.12: 2 residues within 4Å:- Chain K: E.5
- Chain O: P.8
1 PLIP interactions:1 interactions with chain O- Hydrogen bonds: O:P.8
NA.15: 2 residues within 4Å:- Chain S: P.8
- Chain W: E.5
1 PLIP interactions:1 interactions with chain W- Hydrogen bonds: W:E.5
NA.18: 4 residues within 4Å:- Chain Q: Q.189
- Chain S: V.20, S.21
- Chain W: P.8
1 PLIP interactions:1 interactions with chain Q- Hydrogen bonds: Q:Q.189
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- De Colibus, L. et al., Structure Elucidation of Coxsackievirus A16 in Complex with Gpp3 Informs a Systematic Review of Highly Potent Capsid Binders to Enteroviruses. Plos Pathog. (2015)
- Release Date
- 2015-09-09
- Peptides
- VP1: AEIMQU
VP2: BFJNRV
VP3: CGKOSW
VP4: DHLPTX - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AE
AI
AM
AQ
AU
AB
BF
BJ
BN
BR
BV
BC
CG
CK
CO
CS
CW
CD
DH
DL
DP
DT
DX
D
SMTL ID : 5abj.3 (3 other biounits)
Structure of Coxsackievirus A16 in complex with GPP3
VP1
Toggle Identical (AEIMQU)VP2
Toggle Identical (BFJNRV)VP3
Toggle Identical (CGKOSW)VP4
Toggle Identical (DHLPTX)Related Entries With Identical Sequence
4jgy.1 | 4jgy.2 | 4jgy.3 | 4jgy.4 | 4jgy.5 | 4jgz.1 | 4jgz.2 | 4jgz.3 | 4jgz.4 | 4jgz.5 | 5abj.1 | 5abj.2 | 5abj.4 | 5c4w.1 | 5c4w.2 | 5c4w.3 | 5c4w.4 | 5c8c.1 | 5c8c.2 | 5c8c.3 | 5c8c.4 | 5c9a.1 | 5c9a.2 | 5c9a.3 | 5c9a.4 | 5tsl.1 | 5tsl.2 | 5tsl.3 | 5tsl.4 | 5tsl.5 more...less...5tsl.6 | 6lha.1 | 6lha.2 | 6lha.3 | 6lha.4 | 6lhb.1 | 6lhb.2 | 6lhb.3 | 6lhb.4 | 6lhc.1 | 6lhc.2 | 6lhc.3 | 6lhc.4 | 6lhk.1 | 6lhk.2 | 6lhk.3 | 6lhk.4 | 6lhl.1 | 6lhl.2 | 6lhl.3 | 6lhl.4 | 6lho.1 | 6lho.2 | 6lho.3 | 6lho.4 | 6lhp.1 | 6lhp.2 | 6lhp.3 | 6lhp.4 | 6lhq.1 | 6lhq.2 | 6lhq.3 | 6lhq.4 | 7y7m.1 | 7y7m.2 | 7y7m.3 | 7y7m.4 | 7yms.1 | 7yms.2 | 7yms.3 | 7yms.4 | 7yv2.1 | 7yv2.2 | 7yv2.3 | 7yv2.4 | 7yv7.1 | 7yv7.2 | 7yv7.3 | 7yv7.4