SMTL ID : 5abj.4 (3 other biounits)

Structure of Coxsackievirus A16 in complex with GPP3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.75 Å

Oligo State

hetero-oligomer

Ligands

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 2 residues within 4Å: Chain A: L.89, R.250 Ligand excluded by PLIP

1 x YM2: 1-[(3S)-5-[4-[(E)-ETHOXYIMINOMETHYL]PHENOXY]-3-METHYL-PENTYL]-3-PYRIDIN-4-YL-IMIDAZOLIDIN-2-ONE(Non-covalent)

YM2.2: 18 residues within 4Å: Chain A: I.111, D.112, L.113, M.114, F.135, F.137, Y.155, P.177, S.178, V.179, V.190, V.192, M.195, Y.201, Q.202, W.203, N.228, M.230 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:I.111, A:L.113, A:F.135, A:F.135, A:Y.155, A:Y.155, A:V.179, A:V.192, A:W.203, A:N.228, A:M.230 Hydrogen bonds: A:L.113

1 x NA: SODIUM ION(Non-functional Binders)

NA.3: 1 residues within 4Å: Chain C: P.8 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

De Colibus, L. et al., Structure Elucidation of Coxsackievirus A16 in Complex with Gpp3 Informs a Systematic Review of Highly Potent Capsid Binders to Enteroviruses. Plos Pathog. (2015)

Release Date

2015-09-09

Peptides

VP1: A
VP2: B
VP3: C
VP4: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

VP1

VP2

VP3

VP4

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