SMTL ID : 5c8c.4 (3 other biounits)

Crystal structure of recombinant coxsackievirus A16 capsid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x STE: STEARIC ACID(Non-covalent)

STE.1: 17 residues within 4Å: Chain A: I.111, D.112, L.113, F.135, F.137, Y.153, Y.155, P.177, V.179, V.190, V.192, M.195, Y.201, W.203, N.228, M.230, F.233 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:I.111, A:L.113, A:F.135, A:F.137, A:Y.155, A:V.179, A:V.190, A:V.192, A:Y.201, A:Y.201, A:W.203, A:N.228, A:F.233, A:F.233 Hydrogen bonds: A:L.113

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 1 residues within 4Å: Chain A: R.250 Ligand excluded by PLIP CL.4: 2 residues within 4Å: Chain B: T.203, I.204 Ligand excluded by PLIP

1 x K: POTASSIUM ION(Non-covalent)

K.3: 4 residues within 4Å: Chain A: T.28, A.29, N.31, N.71 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ren, J. et al., Structures of Coxsackievirus A16 Capsids with Native Antigenicity: Implications for Particle Expansion, Receptor Binding, and Immunogenicity. J.Virol. (2015)

Release Date

2015-09-30

Peptides

VP1: A
VP0: B
VP3: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

VP1

VP0

VP3

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