SMTL ID : 5dxm.1

Crystal Structure of the ER-alpha Ligand-binding Domain in Complex with the Cyclofenil Derivative 3-[(E)-(1s,5s)-bicyclo[3.3.1]non-9-ylidene(4-hydroxyphenyl)methyl]phenol

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.37 Å

Oligo State

hetero-2-2-mer

Ligands

2 x 5J0: 3-[(E)-(1s,5s)-bicyclo[3.3.1]non-9-ylidene(4-hydroxyphenyl)methyl]phenol(Non-covalent)

5J0.1: 13 residues within 4Å: Chain A: M.46, L.49, T.50, A.53, E.56, L.90, M.91, R.97, F.107, M.124, I.127, G.224, L.228 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.49, A:A.53, A:A.53, A:L.90, A:F.107, A:I.127, A:L.228 Hydrogen bonds: A:M.46, A:E.56, A:R.97 Water bridges: A:R.97 pi-Stacking: A:F.107 5J0.2: 14 residues within 4Å: Chain B: M.46, L.49, T.50, A.53, E.56, L.90, M.91, R.97, F.107, M.124, I.127, F.128, L.131, L.228 16 PLIP interactions: 16 interactions with chain B Hydrophobic interactions: B:L.49, B:A.53, B:A.53, B:L.90, B:F.107, B:I.127, B:F.128, B:L.131, B:L.228, B:L.228 Hydrogen bonds: B:M.46, B:T.50, B:E.56, B:R.97 Water bridges: B:R.97 pi-Stacking: B:F.107

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nwachukwu, J.C. et al., Predictive features of ligand-specific signaling through the estrogen receptor. Mol.Syst.Biol. (2016)

Release Date

2016-05-04

Peptides

Estrogen receptor: AB
Nuclear receptor coactivator 2: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Estrogen receptor

Nuclear receptor coactivator 2

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