SMTL ID : 5efi.1

Crystal structure of mouse CD1d in complex with the p99p lipopeptide

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 1.80 Å
Oligo State
hetero-1-1-1-mer
Ligands
1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
1 x NAG- NAG- BMA- MAN- MAN- FUC: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
1 x CIT: CITRIC ACID(Non-functional Binders)
1 x NA: SODIUM ION(Non-functional Binders)
1 x PLM: PALMITIC ACID(Covalent)
1 x OCA: OCTANOIC ACID (CAPRYLIC ACID)(Non-covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Girardi, E. et al., Structure of an alpha-Helical Peptide and Lipopeptide Bound to the Nonclassical Major Histocompatibility Complex (MHC) Class I Molecule CD1d. J.Biol.Chem. (2016)
Release Date
2016-03-30
Peptides
Antigen-presenting glycoprotein CD1d1: A
Beta-2-microglobulin: B
p99p: C
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
C
C