SMTL ID : 5f99.1

X-ray Structure of the MMTV-A Nucleosome Core Particle

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.63 Å

Oligo State

hetero-2-2-2-2-mer

Ligands

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 3 residues within 4Å: Chain A: M.120, P.121, K.122 Ligand excluded by PLIP CL.2: 6 residues within 4Å: Chain C: G.44, A.45, G.46, A.47 Chain D: T.87, S.88 Ligand excluded by PLIP CL.3: 3 residues within 4Å: Chain E: M.120, P.121, K.122 Ligand excluded by PLIP CL.5: 6 residues within 4Å: Chain G: G.44, A.45, G.46, A.47 Chain H: T.87, S.88 Ligand excluded by PLIP

1 x MG: MAGNESIUM ION(Non-covalent)

MG.4: 2 residues within 4Å: Chain E: Q.76, D.77 4 PLIP interactions: 1 interactions with chain E, 3 Ligand-Water interactions Metal complexes: E:D.77, H2O.10, H2O.11, H2O.14

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Frouws, T.D. et al., X-ray structure of the MMTV-A nucleosome core. Proc.Natl.Acad.Sci.USA (2016)

Release Date

2016-02-03

Peptides

Histone H3.2: AE
Histone H4: BF
Histone H2A type 1: CG
Histone H2B 1.1: DH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
E

B
B

F
F

C
C

G
G

D
D

H
H

Histone H3.2

Histone H4

Histone H2A type 1

Histone H2B 1.1

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