- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.05 Å
- Oligo State
- hetero-2-2-2-2-mer
- Ligands
- 14 x MN: MANGANESE (II) ION(Non-functional Binders)(Non-covalent)
MN.1: 2 residues within 4Å:- Chain A: G.70, G.71
No protein-ligand interaction detected (PLIP)MN.2: 2 residues within 4Å:- Chain A: A.133, G.134
No protein-ligand interaction detected (PLIP)MN.3: 1 residues within 4Å:- Chain A: G.100
No protein-ligand interaction detected (PLIP)MN.4: 2 residues within 4Å:- Chain A: G.39, G.40
No protein-ligand interaction detected (PLIP)MN.5: 1 residues within 4Å:- Chain A: G.121
No protein-ligand interaction detected (PLIP)MN.6: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MN.7: 2 residues within 4Å:- Chain A: G.137, G.138
No protein-ligand interaction detected (PLIP)MN.30: 1 residues within 4Å:- Chain B: G.100
No protein-ligand interaction detected (PLIP)MN.31: 1 residues within 4Å:- Chain B: G.134
No protein-ligand interaction detected (PLIP)MN.32: 2 residues within 4Å:- Chain B: T.120, G.121
No protein-ligand interaction detected (PLIP)MN.33: 2 residues within 4Å:- Chain B: G.71, A.72
No protein-ligand interaction detected (PLIP)MN.34: 1 residues within 4Å:- Chain B: G.81
No protein-ligand interaction detected (PLIP)MN.35: 2 residues within 4Å:- Chain B: G.39, G.40
No protein-ligand interaction detected (PLIP)MN.39: 1 residues within 4Å:- Chain G: D.77
5 PLIP interactions:1 interactions with chain G, 4 Ligand-Water interactions- Metal complexes: G:D.77, H2O.26, H2O.26, H2O.26, H2O.29
- 4 x IMT: 4-AMINO-(1-METHYLIMIDAZOLE)-2-CARBOXYLIC ACID(Non-functional Binders)
IMT.8: 5 residues within 4Å:- Chain A: G.31, T.32
- Ligands: PYB.9, PYB.15, PYB.16
No protein-ligand interaction detected (PLIP)IMT.10: 7 residues within 4Å:- Chain A: G.33, T.34, A.35
- Ligands: PYB.9, PYB.11, PYB.14, PYB.15
No protein-ligand interaction detected (PLIP)IMT.19: 6 residues within 4Å:- Chain B: G.31, T.32, G.33
- Ligands: PYB.20, PYB.26, PYB.27
No protein-ligand interaction detected (PLIP)IMT.21: 7 residues within 4Å:- Chain B: G.33, T.34, A.35
- Ligands: PYB.20, PYB.22, PYB.25, PYB.26
No protein-ligand interaction detected (PLIP)- 12 x PYB: 4-AMINO-(1-METHYLPYRROLE)-2-CARBOXYLIC ACID(Non-functional Binders)(Non-covalent)
PYB.9: 7 residues within 4Å:- Chain A: T.32, G.33
- Ligands: IMT.8, IMT.10, PYB.14, PYB.15, PYB.16
No protein-ligand interaction detected (PLIP)PYB.11: 6 residues within 4Å:- Chain A: T.34, A.35, T.36
- Ligands: IMT.10, ABU.12, PYB.13
No protein-ligand interaction detected (PLIP)PYB.13: 7 residues within 4Å:- Chain B: A.113, C.114, A.115
- Ligands: PYB.11, ABU.12, PYB.14, OGG.36
No protein-ligand interaction detected (PLIP)PYB.14: 7 residues within 4Å:- Chain B: C.114, A.115, C.116
- Ligands: PYB.9, IMT.10, PYB.13, PYB.15
No protein-ligand interaction detected (PLIP)PYB.15: 8 residues within 4Å:- Chain B: A.115, C.116, T.117
- Ligands: IMT.8, PYB.9, IMT.10, PYB.14, PYB.16
No protein-ligand interaction detected (PLIP)PYB.16: 9 residues within 4Å:- Chain A: G.31
- Chain B: C.116, T.117, T.118
- Chain E: A.14
- Ligands: IMT.8, PYB.9, PYB.15, BAL.17
No protein-ligand interaction detected (PLIP)PYB.20: 8 residues within 4Å:- Chain B: T.32, G.33, T.34
- Ligands: IMT.19, IMT.21, PYB.25, PYB.26, PYB.27
No protein-ligand interaction detected (PLIP)PYB.22: 7 residues within 4Å:- Chain A: A.113
- Chain B: T.34, A.35, T.36
- Ligands: IMT.21, ABU.23, PYB.24
No protein-ligand interaction detected (PLIP)PYB.24: 7 residues within 4Å:- Chain A: A.113, C.114, A.115
- Ligands: PYB.22, ABU.23, PYB.25, OGG.36
No protein-ligand interaction detected (PLIP)PYB.25: 8 residues within 4Å:- Chain A: C.114, A.115, C.116
- Chain B: G.33
- Ligands: PYB.20, IMT.21, PYB.24, PYB.26
No protein-ligand interaction detected (PLIP)PYB.26: 8 residues within 4Å:- Chain A: A.115, C.116, T.117
- Ligands: IMT.19, PYB.20, IMT.21, PYB.25, PYB.27
No protein-ligand interaction detected (PLIP)PYB.27: 9 residues within 4Å:- Chain A: C.116, T.117, T.118
- Chain B: G.31
- Chain I: K.13
- Ligands: IMT.19, PYB.20, PYB.26, BAL.28
No protein-ligand interaction detected (PLIP)- 2 x ABU: GAMMA-AMINO-BUTANOIC ACID(Non-functional Binders)
ABU.12: 5 residues within 4Å:- Chain B: A.113, C.114
- Ligands: PYB.11, PYB.13, OGG.36
No protein-ligand interaction detected (PLIP)ABU.23: 6 residues within 4Å:- Chain A: T.112, A.113
- Chain B: A.35
- Ligands: PYB.22, PYB.24, OGG.36
No protein-ligand interaction detected (PLIP)- 2 x BAL: BETA-ALANINE(Non-functional Binders)(Non-covalent)
BAL.17: 5 residues within 4Å:- Chain A: A.30, G.31
- Chain B: T.117
- Ligands: PYB.16, DIB.18
No protein-ligand interaction detected (PLIP)BAL.28: 7 residues within 4Å:- Chain A: T.117, T.118
- Chain B: A.30, G.31
- Chain I: A.14
- Ligands: PYB.27, DIB.29
No protein-ligand interaction detected (PLIP)- 2 x DIB: 3-AMINO-(DIMETHYLPROPYLAMINE)(Non-functional Binders)
DIB.18: 6 residues within 4Å:- Chain A: A.29, A.30, G.31
- Chain B: T.119, T.120
- Ligands: BAL.17
No protein-ligand interaction detected (PLIP)DIB.29: 7 residues within 4Å:- Chain A: T.118, T.119, T.120
- Chain B: A.29, A.30, G.31
- Ligands: BAL.28
No protein-ligand interaction detected (PLIP)- 1 x OGG: 2-(2-CARBAMOYLMETHOXY-ETHOXY)-ACETAMIDE(Non-functional Binders)
OGG.36: 7 residues within 4Å:- Chain A: A.113
- Chain B: A.113, C.114
- Ligands: ABU.12, PYB.13, ABU.23, PYB.24
No protein-ligand interaction detected (PLIP)- 4 x CL: CHLORIDE ION(Non-functional Binders)
CL.37: 3 residues within 4Å:- Chain C: M.120, P.121, K.122
Ligand excluded by PLIPCL.38: 6 residues within 4Å:- Chain E: G.44, A.45, G.46, A.47
- Chain F: T.87, S.88
Ligand excluded by PLIPCL.40: 3 residues within 4Å:- Chain G: M.120, P.121, K.122
Ligand excluded by PLIPCL.41: 6 residues within 4Å:- Chain I: G.44, A.45, G.46, A.47
- Chain J: T.87, S.88
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Edayathumangalam, R.S. et al., Molecular Recognition of the Nucleosomal 'Supergroove. Proc.Natl.Acad.Sci.USA (2004)
- Release Date
- 2004-05-11
- Peptides
- Histone H3: CG
Histone H4: DH
Histone H2A: EI
Histone H2B: FJ - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:C
AG
ED
BH
FE
CI
GF
DJ
H
SMTL ID : 1s32.1
Molecular Recognition of the Nucleosomal 'Supergroove
Histone H3
Histone H4
Histone H2A
Histone H2B
Related Entries With Identical Sequence
1kx3.1 | 1kx4.1 | 1kx5.1 | 1m18.1 | 1m19.1 | 1m1a.1 | 1p34.1 | 1p3a.1 | 1p3k.1 | 1p3l.1 | 1p3m.1 | 1zbb.1 | 1zla.1 | 2fj7.1 | 2io5.1 | 2nzd.1 | 3b6f.1 | 3b6g.1 | 3c1b.1 | 3c1c.1 | 3c9k.1 | 3c9k.2 | 3kuy.1 | 3kxb.1 | 3lel.1 | 3lel.2 | 3lja.1 | 3lz0.1 | 3lz1.1 | 3mgp.1 more...less...3mgq.1 | 3mgr.1 | 3mgs.1 | 3mnn.1 | 3mvd.1 | 3o62.1 | 3reh.1 | 3rei.1 | 3rej.1 | 3rek.1 | 3rel.1 | 3tu4.1 | 3tu4.2 | 3ut9.1 | 3uta.1 | 3utb.1 | 3x1s.1 | 3x1t.1 | 3x1u.1 | 3x1v.1 | 4h9n.1 | 4h9o.1 | 4h9p.1 | 4h9p.2 | 4h9q.1 | 4h9q.2 | 4h9r.1 | 4h9r.2 | 4j8u.1 | 4j8v.1 | 4j8v.2 | 4j8v.3 | 4j8w.1 | 4j8x.1 | 4j8x.2 | 4j8x.3 | 4r8p.1 | 4wu8.1 | 4wu9.1 | 4xuj.1 | 5bnv.1 | 5bnx.1 | 5bo0.1 | 5bs7.1 | 5bsa.1 | 5cp6.1 | 5dnm.1 | 5dnn.1 | 5f99.1 | 5gsu.1 | 5gt0.1 | 5gt3.1 | 5hq2.1 | 5ja4.1 | 5kdm.1 | 5nl0.1 | 5nl0.2 | 5omx.1 | 5ong.1 | 5onw.1 | 5oxv.1 | 5oy7.1 | 5x0y.1 | 5xf6.1 | 5z3l.1 | 5z3o.1 | 5z3u.1 | 5z3v.1 | 6esf.1 | 6esg.1 | 6esh.1 | 6esi.1 | 6fml.1 | 6iro.1 | 6jyl.1 | 6k1p.1 | 6kiu.1 | 6kiv.1 | 6kiw.1 | 6kix.1 | 6kiz.1 | 6nj9.1 | 6nn6.1 | 6nog.1 | 6nqa.1 | 6o96.1 | 6om3.1 | 6om3.2 | 6pa7.1 | 6pwv.1 | 6r1u.1 | 6r25.1 | 6s01.1 | 6t9l.1 | 6tda.1 | 6ugm.1 | 6uh5.1 | 6uxw.1 | 6ven.1 | 6vyp.1 | 6vyp.2 | 6w5i.1 | 6wz5.1 | 6wz9.1 | 6x0n.1 | 6x59.1 | 6x5a.1 | 6xjd.1 | 7a08.1 | 7at8.1 | 7bwd.1 | 7ciz.1 | 7ciz.2 | 7ciz.3 | 7cj0.1 | 7cj0.2 | 7cro.1 | 7crp.1 | 7crq.1 | 7crr.1 | 7e8d.1 | 7e8i.1 | 7eg6.1 | 7egp.1 | 7enn.1 | 7jzv.1 | 7oh9.1 | 7oha.1 | 7ohb.1 | 7ohc.1 | 7ssa.1 | 7swy.1 | 7tn2.1 | 7u50.1 | 7u51.1 | 7u52.1 | 7u53.1 | 7uv9.1 | 7v1m.1 | 7v1m.2 | 7xpx.1 | 7y8r.1 | 7yi1.1 | 7yi4.1 | 7yi5.1 | 7zs9.1 | 7zsa.1 | 7zsb.1 | 8aag.1 | 8atf.1 | 8av6.1 | 8cbn.1 | 8cbq.1 | 8ceo.1 | 8cww.1 | 8cze.1 | 8f86.1 | 8g86.1 | 8g88.1 | 8g8b.1 | 8g8g.1 | 8gui.1 | 8guj.1 | 8guk.1 | 8hag.1 | 8hah.1 | 8hai.1 | 8haj.1 | 8hak.1 | 8hal.1 | 8ham.1 | 8han.1 | 8hxy.1 | 8hxz.1 | 8hy0.1 | 8ihm.1 | 8iht.1 | 8jbx.1 | 8jcc.1 | 8jcd.1 | 8jho.1 | 8kd2.1 | 8kd3.1 | 8kd4.1 | 8kd5.1 | 8kd6.1 | 8kd7.1 | 8oo7.1 | 8ooa.1 | 8oop.1 | 8oos.1 | 8pc5.1 | 8pc6.1 | 8peo.1 | 8pep.1 | 8qzm.1 | 8siy.1 | 8t3t.1 | 8t3w.1 | 8t3y.1 | 8t9f.1 | 8t9h.1 | 8thu.1 | 8uxq.1 | 8v4y.1 | 8v6v.1 | 8v7l.1 | 8vws.1 | 8vwt.1 | 8vwu.1 | 8vwv.1 | 8yv8.1 | 9eoz.1 | 9ipu.1