- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.32 Å
- Oligo State
- hetero-2-2-2-2-mer
- Ligands
- 33 x MN: MANGANESE (II) ION(Non-functional Binders)(Non-covalent)
MN.1: 1 residues within 4Å:- Chain A: G.79
No protein-ligand interaction detected (PLIP)MN.2: 2 residues within 4Å:- Chain A: T.107, C.108
No protein-ligand interaction detected (PLIP)MN.3: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MN.4: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MN.5: 2 residues within 4Å:- Chain A: A.128, T.129
No protein-ligand interaction detected (PLIP)MN.6: 1 residues within 4Å:- Chain A: T.141
No protein-ligand interaction detected (PLIP)MN.7: 2 residues within 4Å:- Chain A: G.15, C.16
No protein-ligand interaction detected (PLIP)MN.8: 2 residues within 4Å:- Chain A: G.138, G.139
No protein-ligand interaction detected (PLIP)MN.9: 2 residues within 4Å:- Chain A: A.42, A.43
No protein-ligand interaction detected (PLIP)MN.10: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MN.11: 2 residues within 4Å:- Chain A: T.6, C.85
No protein-ligand interaction detected (PLIP)MN.12: 1 residues within 4Å:- Chain A: G.63
No protein-ligand interaction detected (PLIP)MN.13: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MN.14: 1 residues within 4Å:- Chain A: G.122
No protein-ligand interaction detected (PLIP)MN.15: 1 residues within 4Å:- Chain A: G.135
No protein-ligand interaction detected (PLIP)MN.16: 1 residues within 4Å:- Chain A: G.101
No protein-ligand interaction detected (PLIP)MN.17: 3 residues within 4Å:- Chain A: G.79
- Chain B: G.68, C.69
No protein-ligand interaction detected (PLIP)MN.18: 2 residues within 4Å:- Chain A: G.71, G.72
No protein-ligand interaction detected (PLIP)MN.19: 2 residues within 4Å:- Chain A: G.39, G.40
No protein-ligand interaction detected (PLIP)MN.20: 1 residues within 4Å:- Chain B: A.4
No protein-ligand interaction detected (PLIP)MN.21: 2 residues within 4Å:- Chain B: A.103, G.104
No protein-ligand interaction detected (PLIP)MN.22: 2 residues within 4Å:- Chain B: T.6, C.85
No protein-ligand interaction detected (PLIP)MN.23: 3 residues within 4Å:- Chain A: G.138
- Chain B: C.10, A.11
No protein-ligand interaction detected (PLIP)MN.24: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MN.25: 1 residues within 4Å:- Chain B: A.140
No protein-ligand interaction detected (PLIP)MN.26: 2 residues within 4Å:- Chain B: G.138, G.139
No protein-ligand interaction detected (PLIP)MN.27: 1 residues within 4Å:- Chain B: G.135
No protein-ligand interaction detected (PLIP)MN.28: 1 residues within 4Å:- Chain B: G.101
No protein-ligand interaction detected (PLIP)MN.29: 2 residues within 4Å:- Chain B: G.71, G.72
No protein-ligand interaction detected (PLIP)MN.30: 1 residues within 4Å:- Chain B: G.122
No protein-ligand interaction detected (PLIP)MN.31: 2 residues within 4Å:- Chain B: G.39, G.40
No protein-ligand interaction detected (PLIP)MN.32: 3 residues within 4Å:- Chain A: G.68, C.69
- Chain B: G.79
No protein-ligand interaction detected (PLIP)MN.35: 1 residues within 4Å:- Chain G: D.77
3 PLIP interactions:1 interactions with chain G, 2 Ligand-Water interactions- Metal complexes: G:D.77, H2O.4, H2O.6
- 4 x CL: CHLORIDE ION(Non-functional Binders)
CL.33: 3 residues within 4Å:- Chain C: M.120, P.121, K.122
Ligand excluded by PLIPCL.34: 6 residues within 4Å:- Chain E: G.44, A.45, G.46, A.47
- Chain F: T.87, S.88
Ligand excluded by PLIPCL.36: 3 residues within 4Å:- Chain G: M.120, P.121, K.122
Ligand excluded by PLIPCL.37: 6 residues within 4Å:- Chain I: G.44, A.45, G.46, A.47
- Chain J: T.87, S.88
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Frouws, T.D. et al., Site-Specific Disulfide Crosslinked Nucleosomes with Enhanced Stability. J. Mol. Biol. (2018)
- Release Date
- 2017-11-15
- Peptides
- Histone H3.2: CG
Histone H4: DH
Histone H2A: EI
Histone H2B 1.1: FJ - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:C
AG
ED
BH
FE
CI
GF
DJ
H
SMTL ID : 5omx.1
X-ray Structure of the H2A-N38C Nucleosome Core Particle
Histone H3.2
Histone H4
Histone H2A
Histone H2B 1.1
Related Entries With Identical Sequence
1eqz.1 | 1f66.1 | 1hq3.1 | 1s32.1 | 1tzy.1 | 1u35.1 | 2aro.1 | 2cv5.1 | 2f8n.1 | 3c1c.1 | 3kxb.1 | 3lja.1 | 3mvd.1 | 3nqu.1 | 3o62.1 | 3r45.1 | 3reh.1 | 3rei.1 | 3rej.1 | 3rek.1 | 3rel.1 | 3tu4.1 | 3tu4.2 | 4hga.1 | 4kgc.1 | 4ld9.1 | 4r8p.1 | 4z2m.1 | 4zux.1 | 4zux.2 more...less...5c3i.1 | 5c3i.2 | 5c3i.3 | 5c3i.4 | 5c3i.5 | 5c3i.6 | 5e5a.1 | 5f99.1 | 5hq2.1 | 5kgf.1 | 5nl0.1 | 5nl0.2 | 5o9g.1 | 5ong.1 | 5onw.1 | 5x0x.1 | 5x0y.1 | 5xf3.1 | 5xf4.1 | 5xf5.1 | 5z3l.1 | 5z3o.1 | 5z3u.1 | 5z3v.1 | 6buz.1 | 6e0c.1 | 6e0p.1 | 6esf.1 | 6esg.1 | 6esh.1 | 6esi.1 | 6ftx.1 | 6g0l.1 | 6hts.1 | 6i84.1 | 6iro.1 | 6j99.1 | 6jyl.1 | 6k1p.1 | 6kw3.1 | 6kw4.1 | 6kw5.1 | 6l9z.1 | 6la2.1 | 6la8.1 | 6la9.1 | 6lab.1 | 6ler.1 | 6ler.2 | 6ltj.1 | 6m3v.1 | 6m44.1 | 6m4d.1 | 6m4g.1 | 6m4h.1 | 6ne3.1 | 6nzo.1 | 6o1d.1 | 6o22.1 | 6o96.1 | 6om3.1 | 6om3.2 | 6pa7.1 | 6pwv.1 | 6pww.1 | 6pwx.1 | 6px1.1 | 6px3.1 | 6r0c.1 | 6r1u.1 | 6r8y.1 | 6rny.1 | 6ryr.1 | 6ryu.1 | 6s01.1 | 6se0.1 | 6se6.1 | 6see.1 | 6sef.1 | 6seg.1 | 6t79.1 | 6t7a.1 | 6t7b.1 | 6t7c.1 | 6t7d.1 | 6t9l.1 | 6tda.1 | 6tem.1 | 6upk.1 | 6upl.1 | 6uxw.1 | 6v92.1 | 6vyp.1 | 6vyp.2 | 6vz4.1 | 6w5i.1 | 6w5m.1 | 6w5n.1 | 6wkr.1 | 6wz5.1 | 6wz9.1 | 6x0n.1 | 6y5d.1 | 6zhx.1 | 6zhy.1 | 7at8.1 | 7cro.1 | 7crp.1 | 7crq.1 | 7crr.1 | 7dbp.1 | 7e8i.1 | 7eg6.1 | 7egp.1 | 7enn.1 | 7jo9.1 | 7joa.1 | 7k5x.1 | 7k5y.1 | 7k60.1 | 7k61.1 | 7k63.1 | 7kbd.1 | 7kbe.1 | 7kbf.1 | 7m1x.1 | 7mbm.1 | 7mbn.1 | 7nkx.1 | 7nky.1 | 7nl0.1 | 7oh9.1 | 7oha.1 | 7ohb.1 | 7ohc.1 | 7otq.1 | 7pet.1 | 7peu.1 | 7pev.1 | 7pew.1 | 7pex.1 | 7pey.1 | 7pez.1 | 7pf0.1 | 7pf2.1 | 7pf3.1 | 7pf4.1 | 7pf5.1 | 7pf6.1 | 7pfa.1 | 7pfc.1 | 7pfd.1 | 7pfe.1 | 7pff.1 | 7pft.1 | 7pfu.1 | 7pfv.1 | 7pfw.1 | 7pfx.1 | 7pii.1 | 7r5r.1 | 7ssa.1 | 7swy.1 | 7tan.1 | 7tn2.1 | 7u0g.1 | 7u0i.1 | 7u0j.1 | 7u46.1 | 7u47.1 | 7u4d.1 | 7ud5.1 | 7unc.1 | 7und.1 | 7unk.1 | 7ux9.1 | 7v90.1 | 7v96.1 | 7v9c.1 | 7v9j.1 | 7v9k.1 | 7v9s.1 | 7va4.1 | 7vcq.1 | 7vcq.2 | 7vcq.3 | 7vdt.1 | 7vdv.1 | 7vvu.1 | 7vvz.1 | 7x3t.1 | 7x3v.1 | 7x3w.1 | 7x3x.1 | 7xfc.1 | 7xfh.1 | 7xfi.1 | 7xfj.1 | 7xfl.1 | 7xfm.1 | 7xfn.1 | 7xnp.1 | 7xpx.1 | 7y5u.1 | 7y5v.1 | 7y5w.1 | 7y60.1 | 7y61.1 | 7yi1.1 | 7yi4.1 | 7yi5.1 | 7ywx.1 | 7yyh.1 | 7zi4.1 | 7zs9.1 | 7zsa.1 | 7zsb.1 | 8a3y.1 | 8aag.1 | 8b0a.1 | 8bvw.1 | 8byq.1 | 8bz1.1 | 8cbn.1 | 8cbq.1 | 8ceo.1 | 8cww.1 | 8cze.1 | 8dk5.1 | 8du4.1 | 8ett.1 | 8etv.1 | 8eu2.1 | 8eue.1 | 8euj.1 | 8evg.1 | 8evh.1 | 8evi.1 | 8evj.1 | 8f86.1 | 8g6g.1 | 8g6h.1 | 8g6q.1 | 8g6s.1 | 8g86.1 | 8g88.1 | 8g8b.1 | 8g8g.1 | 8gpn.1 | 8gxq.12 | 8gxq.79 | 8gxs.12 | 8gxs.81 | 8h1t.1 | 8hxx.1 | 8hxy.1 | 8hxz.1 | 8hy0.1 | 8ihm.1 | 8iht.1 | 8iqf.1 | 8iqg.1 | 8j6s.1 | 8j6t.1 | 8jh2.1 | 8jh3.1 | 8jh4.1 | 8jho.1 | 8kd2.1 | 8kd3.1 | 8kd4.1 | 8kd5.1 | 8kd6.1 | 8kd7.1 | 8of4.1 | 8off.1 | 8pc5.1 | 8pc6.1 | 8peo.1 | 8pep.1 | 8pki.1 | 8pkj.1 | 8rbx.1 | 8siy.1 | 8sps.1 | 8spu.1 | 8svf.1 | 8syp.1 | 8t3t.1 | 8t3w.1 | 8t3y.1 | 8thu.1 | 8tof.1 | 8u5h.1 | 8uw1.1 | 8v25.1 | 8v26.1 | 8v27.1 | 8v28.1 | 8v4y.1 | 8v6v.1 | 8v7l.1 | 8vfx.1 | 8vfy.1 | 8vfz.1 | 8vg0.1 | 8vg1.1 | 8vg2.1 | 8w9d.1 | 8w9e.1 | 8w9f.1 | 8x15.1 | 8x19.1 | 8x1c.1 | 8xjv.48 | 8xjv.49 | 8xjv.50 | 8xjv.51 | 8xjv.52 | 8xjv.53 | 8xjv.54 | 8xjv.55 | 8xjv.56 | 8xjv.57 | 8xjv.58 | 8xjv.59 | 8xjv.60 | 8xjv.61 | 8xjv.62 | 8xjv.63 | 8xjv.64 | 8xjv.65 | 8xjv.66 | 8xjv.67 | 8xjv.68 | 8xjv.69 | 8xjv.70 | 8xjv.71 | 8yjf.1 | 8yjm.1 | 8yti.1 | 8z50.1 | 9b3p.1 | 9fgq.1 | 9fh9.1 | 9gd0.1 | 9gd1.1 | 9gd2.1 | 9gd3.1