- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.75 Å
- Oligo State
- hetero-2-2-2-2-mer
- Ligands
- 3 x SO4: SULFATE ION(Non-functional Binders)
SO4.1: 8 residues within 4Å:- Chain C: G.44, A.45, G.46, A.47
- Chain D: T.87, S.88
- Chain J: A.112
- Ligands: MN.28
5 PLIP interactions:3 interactions with chain D, 2 interactions with chain C- Hydrogen bonds: D:S.88, D:S.88, D:R.89, C:G.46, C:A.47
SO4.3: 6 residues within 4Å:- Chain G: G.44, A.45, G.46, A.47
- Chain H: T.87, S.88
4 PLIP interactions:2 interactions with chain G, 2 interactions with chain H- Hydrogen bonds: G:G.46, G:A.47, H:S.88, H:S.88
SO4.5: 5 residues within 4Å:- Chain H: V.45, H.46, P.47, D.48, T.49
5 PLIP interactions:5 interactions with chain H- Hydrogen bonds: H:H.46, H:D.48, H:D.48, H:T.49
- Salt bridges: H:H.46
- 45 x MN: MANGANESE (II) ION(Non-covalent)(Non-functional Binders)
MN.2: 1 residues within 4Å:- Chain E: D.77
1 PLIP interactions:1 interactions with chain E- Metal complexes: E:D.77
MN.4: 1 residues within 4Å:- Chain H: V.45
1 PLIP interactions:1 interactions with chain H- Metal complexes: H:V.45
MN.6: 1 residues within 4Å:- Chain I: G.135
No protein-ligand interaction detected (PLIP)MN.7: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MN.8: 1 residues within 4Å:- Chain I: G.122
No protein-ligand interaction detected (PLIP)MN.9: 4 residues within 4Å:- Chain I: T.38, G.39, G.40
- Ligands: MN.21
No protein-ligand interaction detected (PLIP)MN.10: 3 residues within 4Å:- Chain I: G.71, G.72
- Ligands: MN.19
No protein-ligand interaction detected (PLIP)MN.11: 2 residues within 4Å:- Chain I: G.79
- Chain J: C.69
No protein-ligand interaction detected (PLIP)MN.12: 1 residues within 4Å:- Chain I: T.141
No protein-ligand interaction detected (PLIP)MN.13: 1 residues within 4Å:- Chain I: G.101
No protein-ligand interaction detected (PLIP)MN.14: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MN.15: 2 residues within 4Å:- Chain I: T.6, C.85
No protein-ligand interaction detected (PLIP)MN.16: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MN.17: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MN.18: 2 residues within 4Å:- Chain I: G.138, G.139
No protein-ligand interaction detected (PLIP)MN.19: 3 residues within 4Å:- Chain I: G.71, G.72
- Ligands: MN.10
No protein-ligand interaction detected (PLIP)MN.20: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MN.21: 3 residues within 4Å:- Chain I: G.39, G.40
- Ligands: MN.9
No protein-ligand interaction detected (PLIP)MN.22: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MN.23: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MN.24: 1 residues within 4Å:- Chain J: G.135
No protein-ligand interaction detected (PLIP)MN.25: 1 residues within 4Å:- Chain J: G.101
No protein-ligand interaction detected (PLIP)MN.26: 1 residues within 4Å:- Chain J: G.122
No protein-ligand interaction detected (PLIP)MN.27: 1 residues within 4Å:- Chain J: G.71
No protein-ligand interaction detected (PLIP)MN.28: 1 residues within 4Å:- Ligands: SO4.1
No protein-ligand interaction detected (PLIP)MN.29: 3 residues within 4Å:- Chain J: G.39, G.40
- Ligands: MN.40
No protein-ligand interaction detected (PLIP)MN.30: 1 residues within 4Å:- Chain J: G.79
No protein-ligand interaction detected (PLIP)MN.31: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MN.32: 2 residues within 4Å:- Chain J: A.128, T.129
No protein-ligand interaction detected (PLIP)MN.33: 1 residues within 4Å:- Chain J: C.115
No protein-ligand interaction detected (PLIP)MN.34: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MN.35: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MN.36: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MN.37: 1 residues within 4Å:- Chain J: G.18
No protein-ligand interaction detected (PLIP)MN.38: 1 residues within 4Å:- Chain J: A.67
No protein-ligand interaction detected (PLIP)MN.39: 1 residues within 4Å:- Chain J: G.138
No protein-ligand interaction detected (PLIP)MN.40: 2 residues within 4Å:- Chain J: G.40
- Ligands: MN.29
No protein-ligand interaction detected (PLIP)MN.41: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MN.42: 1 residues within 4Å:- Chain J: G.68
No protein-ligand interaction detected (PLIP)MN.43: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MN.44: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MN.45: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MN.46: 2 residues within 4Å:- Chain J: T.6, C.85
No protein-ligand interaction detected (PLIP)MN.47: 2 residues within 4Å:- Chain J: C.77, A.78
No protein-ligand interaction detected (PLIP)MN.48: 1 residues within 4Å:- Chain J: A.30
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wu, B. et al., Using soft X-rays for a detailed picture of divalent metal binding in the nucleosome. J.Mol.Biol. (2010)
- Release Date
- 2010-04-14
- Peptides
- Histone H3.2: AE
Histone H4: BF
Histone H2A: CG
Histone H2B 1.1: DH - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AE
EB
BF
FC
CG
GD
DH
H
SMTL ID : 3lja.1
Using Soft X-Rays for a Detailed Picture of Divalent Metal Binding in the Nucleosome
Histone H3.2
Toggle Identical (AE)Histone H4
Histone H2A
Histone H2B 1.1
Toggle Identical (DH)Related Entries With Identical Sequence
1kx3.1 | 1kx4.1 | 1kx5.1 | 1m18.1 | 1m19.1 | 1m1a.1 | 1p34.1 | 1p3a.1 | 1p3k.1 | 1p3l.1 | 1p3m.1 | 1s32.1 | 1zbb.1 | 1zla.1 | 2fj7.1 | 2io5.1 | 2nzd.1 | 3b6f.1 | 3b6g.1 | 3c1b.1 | 3c1c.1 | 3c9k.1 | 3c9k.2 | 3kuy.1 | 3kxb.1 | 3lel.1 | 3lel.2 | 3lz0.1 | 3lz1.1 | 3mgp.1 more...less...3mgq.1 | 3mgr.1 | 3mgs.1 | 3mnn.1 | 3mvd.1 | 3o62.1 | 3reh.1 | 3rei.1 | 3rej.1 | 3rek.1 | 3rel.1 | 3tu4.1 | 3tu4.2 | 3ut9.1 | 3uta.1 | 3utb.1 | 3x1s.1 | 3x1t.1 | 3x1u.1 | 3x1v.1 | 4h9n.1 | 4h9o.1 | 4h9p.1 | 4h9p.2 | 4h9q.1 | 4h9q.2 | 4h9r.1 | 4h9r.2 | 4j8u.1 | 4j8v.1 | 4j8v.2 | 4j8v.3 | 4j8w.1 | 4j8x.1 | 4j8x.2 | 4j8x.3 | 4r8p.1 | 4wu8.1 | 4wu9.1 | 4xuj.1 | 5bnv.1 | 5bnx.1 | 5bo0.1 | 5bs7.1 | 5bsa.1 | 5cp6.1 | 5dnm.1 | 5dnn.1 | 5f99.1 | 5gsu.1 | 5gt0.1 | 5gt3.1 | 5hq2.1 | 5ja4.1 | 5kdm.1 | 5nl0.1 | 5nl0.2 | 5omx.1 | 5ong.1 | 5onw.1 | 5oxv.1 | 5oy7.1 | 5x0y.1 | 5xf6.1 | 5z3l.1 | 5z3o.1 | 5z3u.1 | 5z3v.1 | 6esf.1 | 6esg.1 | 6esh.1 | 6esi.1 | 6fml.1 | 6iro.1 | 6jyl.1 | 6k1p.1 | 6kiu.1 | 6kiv.1 | 6kiw.1 | 6kix.1 | 6kiz.1 | 6nj9.1 | 6nn6.1 | 6nog.1 | 6nqa.1 | 6o96.1 | 6om3.1 | 6om3.2 | 6pa7.1 | 6pwv.1 | 6pww.1 | 6pwx.1 | 6r1u.1 | 6r25.1 | 6s01.1 | 6t9l.1 | 6tda.1 | 6tem.1 | 6ugm.1 | 6uh5.1 | 6uxw.1 | 6ven.1 | 6vyp.1 | 6vyp.2 | 6w5i.1 | 6w5m.1 | 6w5n.1 | 6wz5.1 | 6wz9.1 | 6x0n.1 | 6x59.1 | 6x5a.1 | 6xjd.1 | 7a08.1 | 7at8.1 | 7bwd.1 | 7ciz.1 | 7ciz.2 | 7ciz.3 | 7cj0.1 | 7cj0.2 | 7cro.1 | 7crp.1 | 7crq.1 | 7crr.1 | 7e8d.1 | 7e8i.1 | 7eg6.1 | 7egp.1 | 7enn.1 | 7jzv.1 | 7mbm.1 | 7mbn.1 | 7oh9.1 | 7oha.1 | 7ohb.1 | 7ohc.1 | 7ssa.1 | 7swy.1 | 7tn2.1 | 7u50.1 | 7u51.1 | 7u52.1 | 7u53.1 | 7uv9.1 | 7v1m.1 | 7v1m.2 | 7xpx.1 | 7y8r.1 | 7yi1.1 | 7yi4.1 | 7yi5.1 | 7zs9.1 | 7zsa.1 | 7zsb.1 | 8aag.1 | 8atf.1 | 8av6.1 | 8cbn.1 | 8cbq.1 | 8ceo.1 | 8cww.1 | 8cze.1 | 8f86.1 | 8g86.1 | 8g88.1 | 8g8b.1 | 8g8g.1 | 8gui.1 | 8guj.1 | 8guk.1 | 8hag.1 | 8hah.1 | 8hai.1 | 8haj.1 | 8hak.1 | 8hal.1 | 8ham.1 | 8han.1 | 8hxy.1 | 8hxz.1 | 8hy0.1 | 8ihm.1 | 8iht.1 | 8jbx.1 | 8jcc.1 | 8jcd.1 | 8jho.1 | 8kd2.1 | 8kd3.1 | 8kd4.1 | 8kd5.1 | 8kd6.1 | 8kd7.1 | 8oo7.1 | 8ooa.1 | 8oop.1 | 8oos.1 | 8pc5.1 | 8pc6.1 | 8peo.1 | 8pep.1 | 8qzm.1 | 8siy.1 | 8t3t.1 | 8t3w.1 | 8t3y.1 | 8t9f.1 | 8t9h.1 | 8thu.1 | 8uxq.1 | 8v4y.1 | 8v6v.1 | 8v7l.1 | 8vws.1 | 8vwt.1 | 8vwu.1 | 8vwv.1 | 8yv8.1 | 9eoz.1 | 9ipu.1