SMTL ID : 5fkp.1

Crystal structure of the mouse CD1d in complex with the p99 peptide

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 1.80 Å
Oligo State
hetero-1-1-1-mer
Ligands
1 x NAG- NAG- BMA- MAN- FUC: alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
1 x 6UL: TETRACOSYL PALMITATE(Non-covalent)
4 x GOL: GLYCEROL(Non-functional Binders)
1 x TAR: D(-)-TARTARIC ACID(Non-covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Girardi, E. et al., Structure of an Alpha-Helical Peptide and Lipopeptide Bound to the Non-Classical Mhc Class I Molecule Cd1D. J.Biol.Chem. (2016)
Release Date
2016-03-30
Peptides
ANTIGEN-PRESENTING GLYCOPROTEIN CD1D1: A
BETA 2 MICROGLOBULIN: B
P99: C
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
C
C