SMTL ID : 5i56.1

Agonist-bound GluN1/GluN2A agonist binding domains with TCN201

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.28 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GLY: GLYCINE(Non-covalent)

GLY.1: 10 residues within 4Å: Chain A: F.92, P.124, L.125, T.126, R.131, S.179, S.180, W.223, D.224, F.250 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:P.124, A:T.126, A:S.180, A:S.180 Salt bridges: A:R.131

1 x GLU: GLUTAMIC ACID(Non-covalent)

GLU.2: 10 residues within 4Å: Chain B: H.85, S.111, L.112, T.113, R.118, G.169, S.170, T.171, Y.211, D.212 14 PLIP interactions: 10 interactions with chain B, 4 Ligand-Ligand interactions Hydrophobic interactions: B:Y.211 Hydrogen bonds: B:T.113, B:T.113, B:S.170, B:T.171, B:D.212, E.2, E.2, E.2, E.2 Water bridges: B:G.169, B:S.170 Salt bridges: B:H.85, B:R.118

1 x 67P: N-({4-[2-(benzenecarbonyl)hydrazinecarbonyl]phenyl}methyl)-3-chloro-4-fluorobenzene-1-sulfonamide(Non-covalent)

67P.3: 15 residues within 4Å: Chain A: I.127, P.140, Y.143, R.247, S.248, G.249 Chain B: P.127, F.128, V.129, E.130, L.261, V.264, M.269, E.273, L.277 14 PLIP interactions: 5 interactions with chain A, 9 interactions with chain B Hydrophobic interactions: A:R.247, B:P.127, B:V.129, B:V.264, B:V.264, B:E.273, B:L.277 Hydrogen bonds: A:R.247, A:G.249, B:F.128, B:E.130 Water bridges: A:I.127 pi-Stacking: A:Y.143 Halogen bonds: B:E.130

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yi, F. et al., Structural Basis for Negative Allosteric Modulation of GluN2A-Containing NMDA Receptors. Neuron (2016)

Release Date

2016-09-07

Peptides

Glutamate receptor ionotropic, NMDA 1,Glutamate receptor ionotropic, NMDA 1: A
Glutamate receptor ionotropic, NMDA 2A,Glutamate receptor ionotropic, NMDA 2A: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glutamate receptor ionotropic, NMDA 1,Glutamate receptor ionotropic, NMDA 1

Glutamate receptor ionotropic, NMDA 2A,Glutamate receptor ionotropic, NMDA 2A

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