SMTL ID : 5i57.1

Glutamate- and glycine-bound GluN1/GluN2A agonist binding domains

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GLY: GLYCINE(Non-covalent)

GLY.1: 10 residues within 4Å: Chain A: F.92, P.124, L.125, T.126, R.131, S.179, S.180, W.223, D.224, F.250 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.126, A:S.180, A:S.180, A:D.224 Water bridges: A:T.126 Salt bridges: A:R.131

1 x GLU: GLUTAMIC ACID(Non-covalent)

GLU.2: 10 residues within 4Å: Chain B: H.85, S.111, L.112, T.113, R.118, G.169, S.170, T.171, Y.211, D.212 15 PLIP interactions: 11 interactions with chain B, 4 Ligand-Ligand interactions Hydrophobic interactions: B:Y.211 Hydrogen bonds: B:T.113, B:T.113, B:S.170, B:T.171, B:D.212, E.2, E.2, E.2, E.2 Water bridges: B:T.113, B:G.169, B:S.170 Salt bridges: B:H.85, B:R.118

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yi, F. et al., Structural Basis for Negative Allosteric Modulation of GluN2A-Containing NMDA Receptors. Neuron (2016)

Release Date

2016-09-21

Peptides

Glutamate receptor ionotropic, NMDA 1,Glutamate receptor ionotropic, NMDA 1: A
Glutamate receptor ionotropic, NMDA 2A,Glutamate receptor ionotropic, NMDA 2A: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glutamate receptor ionotropic, NMDA 1,Glutamate receptor ionotropic, NMDA 1

Glutamate receptor ionotropic, NMDA 2A,Glutamate receptor ionotropic, NMDA 2A

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