SMTL ID : 5i59.1

Glutamate- and glycine-bound GluN1/GluN2A agonist binding domains with MPX 007

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GLY: GLYCINE(Non-covalent)

GLY.1: 10 residues within 4Å: Chain A: F.92, P.124, L.125, T.126, R.131, S.179, S.180, W.223, D.224, F.250 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:T.126, A:T.126, A:S.180, A:S.180, A:D.224 Water bridges: A:D.224 Salt bridges: A:R.131

1 x GLU: GLUTAMIC ACID(Non-covalent)

GLU.2: 11 residues within 4Å: Chain B: H.85, S.111, L.112, T.113, R.118, G.169, S.170, T.171, Y.211, D.212, Y.242 15 PLIP interactions: 13 interactions with chain B, 2 Ligand-Ligand interactions Hydrophobic interactions: B:Y.211 Hydrogen bonds: B:S.111, B:T.113, B:T.113, B:T.113, B:S.170, B:S.170, B:T.171, B:T.171, B:D.212, E.2, E.2 Water bridges: B:E.172 Salt bridges: B:H.85, B:R.118

1 x 67Q: 5-({[(3,4-difluorophenyl)sulfonyl]amino}methyl)-6-methyl-N-[(2-methyl-4H-1lambda~4~,3-thiazol-5-yl)methyl]pyrazine-2-carboxamide(Non-covalent)

67Q.3: 15 residues within 4Å: Chain A: I.127, P.140, Y.143, R.247, S.248, G.249 Chain B: P.127, F.128, V.129, E.130, L.261, V.264, M.269, E.273, L.277 10 PLIP interactions: 6 interactions with chain B, 4 interactions with chain A Hydrophobic interactions: B:F.128, B:V.129, B:V.264, B:L.277 Hydrogen bonds: B:F.128, B:E.130 Water bridges: A:I.127, A:G.249 pi-Stacking: A:Y.143 pi-Cation interactions: A:R.247

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yi, F. et al., Structural Basis for Negative Allosteric Modulation of GluN2A-Containing NMDA Receptors. Neuron (2016)

Release Date

2016-09-21

Peptides

Glutamate receptor ionotropic, NMDA 1,Glutamate receptor ionotropic, NMDA 1: A
Glutamate receptor ionotropic, NMDA 2A,Glutamate receptor ionotropic, NMDA 2A: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glutamate receptor ionotropic, NMDA 1,Glutamate receptor ionotropic, NMDA 1

Glutamate receptor ionotropic, NMDA 2A,Glutamate receptor ionotropic, NMDA 2A

Related Entries With Identical Sequence