SMTL ID : 5ifi.2 (2 other biounits)

CRYSTAL STRUCTURE OF ACETYL-COA SYNTHETASE IN COMPLEX WITH ADENOSINE-5'-PROPYLPHOSPHATE FROM CRYPTOCOCCUS NEOFORMANS H99

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x PRX: ADENOSINE-5'-MONOPHOSPHATE-PROPYL ESTER(Non-covalent)

PRX.1: 16 residues within 4Å: Chain A: W.348, I.349, T.350, V.425, G.426, E.427, P.428, D.450, T.451, Y.452, W.453, M.454, T.455, D.541, I.553, R.556 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:W.348, A:I.349, A:V.425, A:W.453 Hydrogen bonds: A:G.426, A:D.450, A:T.455, A:D.541, A:R.556 Water bridges: A:D.541 pi-Stacking: A:Y.452, A:Y.452

4 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 7 residues within 4Å: Chain A: H.57, K.329, A.334, H.335, P.336, N.362, I.364 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.362, A:N.362 Water bridges: A:N.362 PO4.3: 2 residues within 4Å: Chain A: H.57, K.329 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:H.57, A:K.329 PO4.4: 5 residues within 4Å: Chain A: P.56, H.57, I.58, G.59, S.64 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.57, A:H.57, A:G.59 PO4.5: 3 residues within 4Å: Chain A: K.311, R.524, T.528 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.311, A:R.524

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.6: 4 residues within 4Å: Chain A: S.37, E.38, D.39, L.40 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.37, A:L.40 EDO.7: 7 residues within 4Å: Chain A: P.43, P.60, N.61, Y.62, A.468, I.469, S.470 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.62 Water bridges: A:N.61, A:E.63, A:S.470, A:S.470 EDO.8: 5 residues within 4Å: Chain A: D.174, A.175, C.219, E.220, Y.519 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:A.175, A:E.220, A:Y.519, A:Y.519 Water bridges: A:K.222, A:R.520 EDO.9: 4 residues within 4Å: Chain A: S.621, A.625, P.638, K.639 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:P.638 Water bridges: A:K.622 EDO.10: 3 residues within 4Å: Chain A: K.71, E.79, W.80 1 PLIP interactions: 1 interactions with chain A Water bridges: A:W.80 EDO.11: 6 residues within 4Å: Chain A: K.166, I.196, C.287, P.288, C.289, E.290 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.166, A:E.290

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Seattle Structural Genomics Center for Infectious Disease (SSGCID) et al., Crystal structure of Acetyl-CoA Synthetase in complex with Adenosine-5'-propylphosphate from Cryptococcus neoformans H99. To Be Published

Release Date

2016-03-16

Peptides

Acetyl-coenzyme A synthetase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Acetyl-coenzyme A synthetase

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