SMTL ID : 8g0r.1

Crystal Structure of Acetyl-CoA synthetase in complex with a cyclopentyl ester AMP inhibitor from Cryptococcus neoformans H99

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-trimer

Ligands

3 x YHF: 5'-O-[(S)-(cyclopentyloxy)(hydroxy)phosphoryl]adenosine(Non-covalent)

YHF.1: 16 residues within 4Å: Chain A: I.349, T.350, V.425, G.426, E.427, P.428, D.450, T.451, Y.452, W.453, M.454, T.455, E.456, D.541, I.553, R.556 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:I.349, A:V.425, A:W.453, A:W.453 Hydrogen bonds: A:G.426, A:T.451, A:W.453, A:T.455, A:D.541, A:D.541, A:R.556 pi-Stacking: A:Y.452, A:Y.452 YHF.2: 17 residues within 4Å: Chain B: I.349, T.350, V.425, G.426, E.427, P.428, D.450, T.451, Y.452, W.453, M.454, T.455, E.456, D.541, I.553, R.556, K.654 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:I.349, B:V.425, B:W.453, B:W.453 Hydrogen bonds: B:G.426, B:D.450, B:W.453, B:T.455, B:D.541, B:D.541, B:R.556, B:K.654 pi-Stacking: B:Y.452, B:Y.452 YHF.3: 15 residues within 4Å: Chain C: I.349, T.350, V.425, G.426, E.427, P.428, D.450, T.451, Y.452, W.453, M.454, T.455, D.541, I.553, R.556 14 PLIP interactions: 14 interactions with chain C Hydrophobic interactions: C:I.349, C:V.425, C:W.453, C:W.453 Hydrogen bonds: C:G.426, C:D.450, C:W.453, C:T.455, C:T.455, C:D.541, C:D.541, C:R.556 pi-Stacking: C:Y.452, C:Y.452

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lovell, S. et al., Crystal Structure of Acetyl-CoA synthetase in complex with a cyclopentyl ester AMP inhibitor from Cryptococcus neoformans H99. To be published

Release Date

2023-02-15

Peptides

Acetyl-coenzyme A synthetase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Acetyl-coenzyme A synthetase

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