SMTL ID : 8g0s.1

Crystal Structure of Acetyl-CoA synthetase in complex with a cyclopentyl ester AMP inhibitor from Cryptococcus neoformans H99 (tetragonal form)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

homo-trimer

Ligands

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 3 residues within 4Å: Chain A: A.334, H.335, P.336 Ligand excluded by PLIP CL.3: 2 residues within 4Å: Chain B: A.334, P.336 Ligand excluded by PLIP CL.5: 1 residues within 4Å: Chain C: A.334 Ligand excluded by PLIP

3 x YHF: 5'-O-[(S)-(cyclopentyloxy)(hydroxy)phosphoryl]adenosine(Non-covalent)

YHF.2: 15 residues within 4Å: Chain A: I.349, T.350, V.425, G.426, E.427, P.428, D.450, T.451, Y.452, W.453, M.454, T.455, D.541, I.553, K.554 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:I.349, A:V.425, A:W.453 Hydrogen bonds: A:G.426, A:T.451, A:Y.452, A:T.455, A:T.455, A:D.541 pi-Stacking: A:Y.452, A:Y.452 YHF.4: 15 residues within 4Å: Chain B: I.349, T.350, V.425, G.426, E.427, P.428, D.450, T.451, Y.452, W.453, M.454, T.455, D.541, I.553, R.556 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:I.349, B:V.425, B:W.453 Hydrogen bonds: B:G.426, B:T.451, B:T.455, B:D.541, B:D.541, B:R.556 pi-Stacking: B:Y.452, B:Y.452 YHF.6: 14 residues within 4Å: Chain C: I.349, T.350, V.425, G.426, E.427, P.428, D.450, T.451, Y.452, W.453, M.454, T.455, D.541, I.553 12 PLIP interactions: 12 interactions with chain C Hydrophobic interactions: C:I.349, C:V.425, C:W.453 Hydrogen bonds: C:G.426, C:T.451, C:W.453, C:T.455, C:T.455, C:D.541, C:D.541 pi-Stacking: C:Y.452, C:Y.452

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, L. et al., Crystal Structure of Acetyl-CoA synthetase in complex with a cyclopentyl ester AMP inhibitor from Cryptococcus neoformans H99 (tetragonal form). To Be Published

Release Date

2023-02-15

Peptides

Acetyl-coenzyme A synthetase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Acetyl-coenzyme A synthetase

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