SMTL ID : 8g0t.1

Crystal Structure of Acetyl-CoA synthetase in complex with a cyclopropyl ester AMP inhibitor from Cryptococcus neoformans H99

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.45 Å

Oligo State

homo-trimer

Ligands

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: E.153, E.157, W.184, Q.185 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.153, A:Q.185 EDO.2: 3 residues within 4Å: Chain A: W.91 Chain B: D.94, K.96 No protein-ligand interaction detected (PLIP) EDO.4: 5 residues within 4Å: Chain B: W.91, Y.92, Y.120 Chain C: K.96, E.113 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Y.120

3 x YHK: 5'-O-[(R)-(cyclopropyloxy)(hydroxy)phosphoryl]adenosine(Non-covalent)

YHK.3: 17 residues within 4Å: Chain A: W.348, I.349, T.350, V.425, G.426, E.427, P.428, D.450, T.451, Y.452, W.453, M.454, T.455, D.541, I.553, R.556, K.654 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:I.349, A:V.425, A:W.453 Hydrogen bonds: A:G.426, A:T.451, A:W.453, A:T.455, A:D.541, A:D.541, A:R.556 Salt bridges: A:K.654 pi-Stacking: A:Y.452, A:Y.452 YHK.5: 17 residues within 4Å: Chain B: W.348, I.349, T.350, V.425, G.426, E.427, P.428, D.450, T.451, Y.452, W.453, M.454, T.455, D.541, I.553, R.556, K.654 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:I.349, B:V.425, B:W.453 Hydrogen bonds: B:W.348, B:G.426, B:D.450, B:T.455, B:T.455, B:D.541, B:D.541, B:R.556 Salt bridges: B:K.654 pi-Stacking: B:Y.452, B:Y.452 YHK.6: 17 residues within 4Å: Chain C: W.348, I.349, T.350, V.425, G.426, E.427, P.428, D.450, T.451, Y.452, W.453, M.454, T.455, D.541, I.553, R.556, K.654 14 PLIP interactions: 14 interactions with chain C Hydrophobic interactions: C:W.348, C:I.349, C:V.425, C:W.453 Hydrogen bonds: C:W.348, C:G.426, C:T.451, C:T.455, C:D.541, C:D.541, C:R.556 Salt bridges: C:K.654 pi-Stacking: C:Y.452, C:Y.452

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, L. et al., Crystal Structure of Acetyl-CoA synthetase in complex with a cyclopropyl ester AMP inhibitor from Cryptococcus neoformans H99. To be published

Release Date

2023-02-15

Peptides

Acetyl-coenzyme A synthetase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Acetyl-coenzyme A synthetase

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