SMTL ID : 7l4g.3 (2 other biounits)

Crystal Structure of Acetyl-CoA synthetase in complex with acetyl adenylate from Cryptococcus neoformans H99

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x 6R9: [[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] ethanoate(Non-covalent)

6R9.1: 18 residues within 4Å: Chain A: I.349, T.350, V.425, G.426, E.427, P.428, D.450, T.451, Y.452, W.453, M.454, T.455, D.541, I.553, R.556, N.562, R.567 Ligands: K.6 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:V.425, A:W.453 Hydrogen bonds: A:G.426, A:D.450, A:T.455, A:T.455, A:D.541, A:R.556, A:N.562 Water bridges: A:I.349, A:I.349, A:T.350 Salt bridges: A:R.567 pi-Stacking: A:Y.452, A:Y.452

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 3 residues within 4Å: Chain A: H.57, K.329, Y.330 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.330 Salt bridges: A:H.57, A:K.329

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 6 residues within 4Å: Chain A: K.329, A.334, H.335, P.336, N.362, I.364 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.335 EDO.4: 4 residues within 4Å: Chain A: D.214, D.218, K.309, P.310 2 PLIP interactions: 2 interactions with chain A Water bridges: A:D.214, A:R.215 EDO.5: 4 residues within 4Å: Chain A: D.174, A.175, E.220, K.222 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.173, A:A.175 Water bridges: A:D.174, A:K.222

1 x K: POTASSIUM ION(Non-covalent)

K.6: 5 residues within 4Å: Chain A: G.426, N.562, G.565, R.567 Ligands: 6R9.1 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:G.426, A:G.565

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fox III, D. et al., Crystal Structure of Acetyl-CoA synthetase in complex with acetyl adenylate from Cryptococcus neoformans H99. to be published

Release Date

2020-12-30

Peptides

Acetyl-coenzyme A synthetase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Acetyl-coenzyme A synthetase

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