SMTL ID : 7l4g.2 (2 other biounits)

Crystal Structure of Acetyl-CoA synthetase in complex with acetyl adenylate from Cryptococcus neoformans H99

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x 6R9: [[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] ethanoate(Non-covalent)

6R9.1: 16 residues within 4Å: Chain A: W.348, I.349, T.350, V.425, G.426, E.427, P.428, D.450, T.451, Y.452, W.453, M.454, T.455, D.541, I.553, R.556 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:I.349, A:V.425, A:W.453 Hydrogen bonds: A:G.426, A:D.450, A:W.453, A:T.455, A:T.455, A:D.541, A:R.556 Water bridges: A:R.556 pi-Stacking: A:Y.452, A:Y.452

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 3 residues within 4Å: Chain A: H.57, K.329, Y.330 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:H.57, A:K.329 PO4.3: 4 residues within 4Å: Chain A: T.307, K.311, R.524, T.528 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.311, A:R.524

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 3 residues within 4Å: Chain A: A.83, K.84, E.87 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.84 Water bridges: A:K.84 EDO.5: 6 residues within 4Å: Chain A: K.329, A.334, H.335, P.336, N.362, I.364 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.335, A:N.362 Water bridges: A:N.362 EDO.6: 5 residues within 4Å: Chain A: D.174, A.175, C.219, E.220, Y.519 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:A.175, A:Y.519, A:Y.519 Water bridges: A:A.175, A:K.222 EDO.7: 4 residues within 4Å: Chain A: S.621, A.625, P.638, K.639 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:P.638 EDO.8: 5 residues within 4Å: Chain A: K.166, C.287, P.288, C.289, E.290 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.166 EDO.9: 5 residues within 4Å: Chain A: V.27, H.28, L.30, W.552, K.554 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.28 Water bridges: A:E.572

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fox III, D. et al., Crystal Structure of Acetyl-CoA synthetase in complex with acetyl adenylate from Cryptococcus neoformans H99. to be published

Release Date

2020-12-30

Peptides

Acetyl-coenzyme A synthetase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Acetyl-coenzyme A synthetase

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