SMTL ID : 5k8f.2 (2 other biounits)

Crystal structure of Acetyl-CoA Synthetase in complex with ATP and Acetyl-AMP from Cryptococcus neoformans H99

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.45 Å

Oligo State

monomer

Ligands

1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 21 residues within 4Å: Chain A: T.303, S.304, G.305, S.306, T.307, K.311, G.426, E.427, P.428, D.450, T.451, Y.452, W.453, M.454, T.455, D.541, I.553, R.556, K.654 Ligands: 6R9.2, MG.3 22 PLIP interactions: 22 interactions with chain A Hydrogen bonds: A:T.303, A:S.304, A:S.304, A:G.305, A:S.306, A:S.306, A:S.306, A:T.307, A:T.307, A:G.426, A:D.450, A:T.455, A:T.455, A:D.541, A:R.556, A:K.654 Salt bridges: A:K.311, A:R.556, A:K.654, A:K.654 pi-Stacking: A:Y.452, A:Y.452

1 x 6R9: [[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] ethanoate(Non-covalent)

6R9.2: 16 residues within 4Å: Chain A: S.304, I.349, G.426, E.427, P.428, D.450, T.451, Y.452, W.453, M.454, T.455, D.541, I.553, R.556, K.654 Ligands: ATP.1 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:I.349, A:W.453 Hydrogen bonds: A:G.426, A:D.450, A:T.455, A:T.455, A:D.541, A:R.556, A:K.654 Salt bridges: A:K.654, A:K.654 pi-Stacking: A:Y.452, A:Y.452

1 x MG: MAGNESIUM ION(Non-functional Binders)

MG.3: 1 residues within 4Å: Ligands: ATP.1 No protein-ligand interaction detected (PLIP)

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 4 residues within 4Å: Chain A: D.90, W.91, Y.92, Y.120 No protein-ligand interaction detected (PLIP) EDO.5: 2 residues within 4Å: Chain A: Y.127, P.131 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.127 EDO.6: 3 residues within 4Å: Chain A: H.57, K.329, Y.330 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.329, A:Y.330

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Seattle Structural Genomics Center for Infectious Disease (SSGCID) et al., Crystal structure of Acetyl-CoA Synthetase in complex with ATP and Acetyl-AMP from Cryptococcus neoformans H99. To Be Published

Release Date

2016-07-13

Peptides

Acetyl-coenzyme A synthetase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Acetyl-coenzyme A synthetase

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