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SMTL ID : 5jdo.1

T. congolense haptoglobin-haemoglobin receptor in complex with haemoglobin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

hetero-1-1-1-1-1-1-mer

Ligands

4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1:	23 residues within 4Å: Chain B: S.27, I.28, T.164, Y.166 Chain C: Y.42, F.43, H.45, F.46, H.58, K.61, V.62, A.65, L.66, L.83, L.86, H.87, L.91, V.93, N.97, F.98, L.101, L.136 Ligands: OXY.2 26 PLIP interactions: 22 interactions with chain C, 4 interactions with chain B, Hydrophobic interactions: C:Y.42, C:Y.42, C:F.43, C:V.62, C:A.65, C:L.66, C:L.83, C:L.86, C:L.91, C:L.91, C:V.93, C:V.93, C:N.97, C:F.98, C:L.101, C:L.136 Salt bridges: C:H.45, C:K.61, C:K.61, B:K.128 pi-Stacking: C:H.58 pi-Cation interactions: C:H.87 Metal complexes: C:H.87 Hydrogen bonds: B:T.164, B:Y.166, B:Y.166
HEM.3:	20 residues within 4Å: Chain A: R.40, F.46, K.50 Chain D: T.37, F.40, F.41, H.62, K.65, V.66, A.69, F.70, L.87, H.91, L.95, V.97, N.101, F.102, L.105, L.140 Ligands: OXY.4 19 PLIP interactions: 16 interactions with chain D, 3 interactions with chain A, Hydrophobic interactions: D:F.40, D:F.40, D:F.41, D:F.41, D:F.41, D:V.66, D:A.69, D:L.87, D:L.95, D:V.97, D:N.101, D:F.102, D:F.102, D:L.105, D:L.140, A:F.46 Metal complexes: D:H.91 Salt bridges: A:R.40, A:K.50
HEM.5:	22 residues within 4Å: Chain A: S.27, I.28, T.164 Chain E: M.32, Y.42, F.43, H.45, F.46, H.58, K.61, V.62, A.65, L.83, L.86, H.87, L.91, V.93, N.97, F.98, L.101, L.136 Ligands: OXY.6 22 PLIP interactions: 20 interactions with chain E, 2 interactions with chain A, Hydrophobic interactions: E:Y.42, E:Y.42, E:F.43, E:F.43, E:V.62, E:A.65, E:L.83, E:L.86, E:L.91, E:L.91, E:V.93, E:V.93, E:F.98, E:F.98, E:L.136, A:I.28 Salt bridges: E:H.45, E:K.61, E:K.61 pi-Cation interactions: E:H.58 Metal complexes: E:H.87 Hydrogen bonds: A:T.164
HEM.7:	21 residues within 4Å: Chain B: R.40, T.43, F.46, K.50 Chain F: F.40, F.41, H.62, K.65, V.66, A.69, F.70, L.87, L.90, H.91, L.95, V.97, N.101, F.102, L.105, L.140 Ligands: OXY.8 23 PLIP interactions: 4 interactions with chain B, 19 interactions with chain F, Hydrophobic interactions: B:T.43, B:F.46, F:F.40, F:F.40, F:F.41, F:F.41, F:V.66, F:A.69, F:L.87, F:L.90, F:L.95, F:V.97, F:V.97, F:N.101, F:F.102, F:L.105, F:L.140 Salt bridges: B:R.40, B:K.50, F:H.62, F:K.65 pi-Stacking: F:H.62 Metal complexes: F:H.91

4 x OXY: OXYGEN MOLECULE(Non-covalent)

OXY.2:	6 residues within 4Å: Chain C: L.29, F.43, H.58, V.62, L.101 Ligands: HEM.1 No protein-ligand interaction detected (PLIP)
OXY.4:	5 residues within 4Å: Chain D: L.27, F.41, H.62, V.66 Ligands: HEM.3 No protein-ligand interaction detected (PLIP)
OXY.6:	4 residues within 4Å: Chain E: L.29, H.58, V.62 Ligands: HEM.5 No protein-ligand interaction detected (PLIP)
OXY.8:	3 residues within 4Å: Chain F: H.62, V.66 Ligands: HEM.7 No protein-ligand interaction detected (PLIP)

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Lane-Serff, H. et al., Evolutionary diversification of the trypanosome haptoglobin-haemoglobin receptor from an ancestral haemoglobin receptor. Elife (2016)

Release Date

2016-04-27

Peptides

Haptoglobin-haemoglobin receptor: A
Haptoglobin-haemoglobin receptor: B
Hemoglobin subunit alpha: C
Hemoglobin subunit beta: D
Hemoglobin subunit alpha: E
Hemoglobin subunit beta: F

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Haptoglobin-haemoglobin receptor

Haptoglobin-haemoglobin receptor

Hemoglobin subunit alpha

Hemoglobin subunit beta

Hemoglobin subunit alpha

Hemoglobin subunit beta

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