SMTL ID : 5jz6.1

Aspartyl/Asparaginyl beta-hydroxylase (AspH)oxygenase and TPR domains in complex with manganese and L-malate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

monomer

Ligands

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 3 residues within 4Å: Chain A: H.350, H.396 Ligands: LMR.6 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.350, A:H.396, H2O.3, H2O.5

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: Q.335, K.337, P.353, R.357, R.359 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:Q.335, A:K.337, A:K.337, A:R.357, A:R.357, A:R.359, A:R.359 Water bridges: A:D.392 GOL.3: 5 residues within 4Å: Chain A: S.126, N.129, D.130, F.160, P.191 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.126, A:N.129 Water bridges: A:D.158 GOL.4: 4 residues within 4Å: Chain A: Y.215, V.230, W.231 Ligands: GOL.5 No protein-ligand interaction detected (PLIP) GOL.5: 3 residues within 4Å: Chain A: W.231, N.377 Ligands: GOL.4 No protein-ligand interaction detected (PLIP)

1 x LMR: (2S)-2-hydroxybutanedioic acid(Non-covalent)

LMR.6: 11 residues within 4Å: Chain A: W.296, S.339, M.341, H.350, R.359, H.361, H.396, R.406, I.408, I.410 Ligands: MN.1 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:W.296 Hydrogen bonds: A:W.296, A:S.339, A:R.359, A:H.361 Salt bridges: A:H.350, A:R.359, A:H.361, A:H.396, A:R.406

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pfeffer, I. et al., Aspartate/asparagine-beta-hydroxylase crystal structures reveal an unexpected epidermal growth factor-like domain substrate disulfide pattern. Nat Commun (2019)

Release Date

2017-05-24

Peptides

Aspartyl/asparaginyl beta-hydroxylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Aspartyl/asparaginyl beta-hydroxylase

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