SMTL ID : 5krh.1

Crystal Structure of the ER-alpha Ligand-binding Domain (Y537S) in Complex with 16-benzylidene estrone

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.24 Å

Oligo State

hetero-2-2-mer

Ligands

2 x 6WN: (8~{R},9~{S},13~{S},14~{S},16~{E})-13-methyl-3-oxidanyl-16-(phenylmethylidene)-6,7,8,9,11,12,14,15-octahydrocyclopenta[ a]phenanthren-17-one(Non-covalent)

6WN.1: 14 residues within 4Å: Chain A: M.46, L.49, A.53, E.56, L.90, L.94, R.97, F.107, G.123, M.124, I.127, G.224, H.227, L.228 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:A.53, A:L.90, A:L.94, A:I.127, A:H.227, A:L.228 Hydrogen bonds: A:E.56, A:R.97, A:H.227 Water bridges: A:L.94 pi-Stacking: A:F.107 6WN.2: 16 residues within 4Å: Chain B: M.46, L.49, A.53, E.56, L.90, M.91, L.94, R.97, F.107, G.123, I.127, M.220, K.223, G.224, H.227, L.228 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:L.49, B:A.53, B:L.90, B:L.94, B:I.127, B:K.223, B:H.227, B:L.228 Hydrogen bonds: B:E.56, B:R.97 Water bridges: B:R.97 pi-Stacking: B:F.107

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nwachukwu, J.C. et al., Systems Structural Biology Analysis of Ligand Effects on ER alpha Predicts Cellular Response to Environmental Estrogens and Anti-hormone Therapies. Cell Chem Biol (2017)

Release Date

2017-02-15

Peptides

Estrogen receptor: AB
NCOA2: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Estrogen receptor

NCOA2

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